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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTAAGTGGTGGTGAGAAGCAGCGCGTGGCGCTAGCTCGTGCATTCTTGAAAGCACCTGCCATTCTgtaagcatccatcttcttcattctttttaattaattgaatggggaccccatttcaacatctctatgacttctatttacatccttgtatatgtgcatgttt...

Basic information

species Vitis vinifera
transcript Vv06s0004g08350.t01
intron # 20
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv06s0004g08350.t01 (Vitis vinifera), 5'ss of exon 20
lower sequence: GLYMA02G40490.1 (Glycine max), 5'ss of exon 17
TTAAGTGGTGGTGAGAAGCAGCGCGTGGCGCTAGCTCGTGCATTCTTGAAAGCACCTGCCATTCTgtaagcatcc--atcttcttcattctttttaa---ttaattgaatg-gggaccccatttcaacatctctatgacttctatttacatccttgtatatgtgcatgttt
|||||||||||||||||||| || || || || |||||||||||||| ||||||||||| || |||| || || |  ||| | ||   || ||  ||   ||  |||  ||  | |    ||||  | || |     | ||||   |  |    || ||| | |  |    
TTAAGTGGTGGTGAGAAGCAACGTGTTGCCCTGGCTCGTGCATTCTTAAAAGCACCTGCAATACTgtgagtattctaatcatattatgtccttgaaaccttttgttgtgtgtagcattgtatttttaaatttac-caagttctggctgaaaa--tgaataagagggtc---

upper sequence: Vv06s0004g08350.t01 (Vitis vinifera), 5'ss of exon 20
lower sequence: GLYMA14G38800.1 (Glycine max), 5'ss of exon 17
TTAAGTGGTGGTGAGAAGCAGCGCGTGGCGCTAGCTCGTGCATTCTTGAAAGCACCTGCCATTCTgtaagcatccatcttcttcattctttttaattaattgaatggggaccccatttcaacatctctatgacttctatttacatccttgtatatgtgcatgttt-
|||||||||||||||||||| || || || ||||||||||| ||||| ||||||||||| || |||| || || |   |   | || ||  |||||   ||   |  | |   ||||  |   | |   | || |   | |   |     |  ||  |   || | 
TTAAGTGGTGGTGAGAAGCAACGTGTTGCCCTAGCTCGTGCGTTCTTAAAAGCACCTGCAATACTgtgagtattctaatatattat-ctacttaatacctttgttctgtatagcattgaattttttaatttacgtagttctgactgaaaatgaataagagggtctt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30256194|gb|CB972037.1|CB972037
EST:     AAGCAGCGCGTGGCGCTAGCTCGTGCATTCTTGAAAGCACCTGCCATTCT                         ACTTTGTGATGAAGCTACGAGTGCACTAGACAGCACAACAGAGTCAGAGAT
genomic: AAGCAGCGCGTGGCGCTAGCTCGTGCATTCTTGAAAGCACCTGCCATTCTgtaagcatcc ... gtcccctcagACTTTGTGATGAAGCTACGAGTGCACTAGACAGCACAACAGAGTCAGAGAT
EST: gi|30256126|gb|CB971969.1|CB971969
EST:     AAGCAGCGCGTGGCGCTAGCTCGTGCATTCTTGAAAGCACCTGCCATTCT                         ACTTTGTGATGAAGCTACGAGTGCACTAGACAGCACAACAGAGTCAGAGAT
genomic: AAGCAGCGCGTGGCGCTAGCTCGTGCATTCTTGAAAGCACCTGCCATTCTgtaagcatcc ... gtcccctcagACTTTGTGATGAAGCTACGAGTGCACTAGACAGCACAACAGAGTCAGAGAT
EST: gi|352778181|gb|FQ468843.1|FQ468843
EST:     AAGCAGCGCGTGGCGCTAGCTCGTGCATTCTTGAAAGCACCTGCCATTCT                         ACTTTGTGATGAAGCTACGAGTGCACTAGACAGCACAACAGAGTCAGAGAT
genomic: AAGCAGCGCGTGGCGCTAGCTCGTGCATTCTTGAAAGCACCTGCCATTCTgtaagcatcc ... gtcccctcagACTTTGTGATGAAGCTACGAGTGCACTAGACAGCACAACAGAGTCAGAGAT
EST: gi|110698612|gb|EE076310.1|EE076310
EST:     AGCAGCGCGTGGCGCTAGCTCGTGCATTCTTAGAA-GCACCTGCCATTCT                         ACTTTGTGATGAAGCTACGAGTGCACTAGACAGCACAACAGAGTCAGAGAT
genomic: AGCAGCGCGTGGCGCTAGCTCGTGCATTCTT-GAAAGCACCTGCCATTCTgtaagcatcc ... gtcccctcagACTTTGTGATGAAGCTACGAGTGCACTAGACAGCACAACAGAGTCAGAGAT