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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCACGTAAGAAGGACAAGCTGAGGTATCGGTATCCTCGTGGTGAATCTTACCTGGATGTTATCCAAAGgtttgcaatctgctgttacaaagaatgatttgtcaaaacttaaatattttttccaactgatttattagaataaactttctgcattaatgcag

Basic information

species Vitis vinifera
transcript Vv06s0004g06920.t01
intron # 20
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv06s0004g06920.t01 (Vitis vinifera), 5'ss of exon 20
lower sequence: LOC_Os03g18310.2 (Oryza sativa), 5'ss of exon 19
GTCACGTAAGAAGGACAAGCTGAGGTATCGGTATCCTCGTGGTGAATCTTACCTGGATGTTATCCAAAGgtttgcaatctgctgttacaaagaatgatttgtcaaaacttaaatattttttccaactgattta-ttagaataaactttctgcattaatgcag
 |||||||  |||||||||||||||||||| |||||| | || ||||| ||||| ||||| || ||||||||        ||| |   |||  || |  ||   | |  ||  ||  |  | || ||  | ||  ||  ||       ||  ||   | |||
ATCACGTAGCAAGGACAAGCTGAGGTATCGTTATCCTAGAGGAGAATCCTACCTCGATGTCATTCAAAGgttaatt-caggctatgtgaaattatcacatgcagacatatat-tacgtaattcacctattgtaactattatcggtgcactttatctttacag

upper sequence: Vv06s0004g06920.t01 (Vitis vinifera), 5'ss of exon 20
lower sequence: LOC_Os03g18310.1 (Oryza sativa), 5'ss of exon 19
GTCACGTAAGAAGGACAAGCTGAGGTATCGGTATCCTCGTGGTGAATCTTACCTGGATGTTATCCAAAGgtttgcaatctgctgttacaaagaatgatttgtcaaaacttaaatattttttccaactgattta-ttagaataaactttctgcattaatgcag--------------
 |||||||  |||||||||||||||||||| |||||| | || ||||| ||||| ||||| || ||||||||        ||| |   |||  || |  ||   | |  ||  ||  |  | || ||  | ||  ||  ||       ||  ||   | |||              
ATCACGTAGCAAGGACAAGCTGAGGTATCGTTATCCTAGAGGAGAATCCTACCTCGATGTCATTCAAAGgttaatt-caggctatgtgaaattatcacatgcagacatatat-tacgtaattcacctattgtaactattatcggtgcactttatctttacagtcttctctgttcag

upper sequence: Vv06s0004g06920.t01 (Vitis vinifera), 5'ss of exon 20
lower sequence: GLYMA11G27410.1 (Glycine max), 5'ss of exon 27
GTCACGTAAGAAGGACAAGCTGAGGTATCGGTATCCTCGTGGTGAATCTTACCTGGATGTTATCCAAAGgtttgcaatctgctgttacaaagaatgatttgtcaaaacttaaatattttttccaactgatttattagaataaactttctgcattaatgcag
 ||  | |||||||||||||| |||||||| |||||||||||||| || ||| ||||||| || ||||||| |   || |  | ||| ||| | |  || ||     |||   |    || |    |||| ||    | | || |||  | | |||| |||
ATCGTGCAAGAAGGACAAGCTTAGGTATCGTTATCCTCGTGGTGAGTCATACTTGGATGTCATTCAAAGgtat---attttatcttataaatattatttagttc---cttgcttcaacttgct---tgatataaataactcaagttttagtaataatacag

upper sequence: Vv06s0004g06920.t01 (Vitis vinifera), 5'ss of exon 20
lower sequence: GLYMA11G27870.1 (Glycine max), 5'ss of exon 21
GTCACGTAAGAAGGACAAGCTGAGGTATCGGTATCCTCGTGGTGAATCTTACCTGGATGTTATCCAAAGgtttgcaatctgctgttacaaagaatgatttgtcaaaacttaaatattttttccaactgatttattagaataaactttctgcattaatgcag
 || || |||||||||||||| |||||||| |||||||||||||| || ||| ||||||| || ||||||| |   || |  | ||| ||| | |  || ||     |||   |    || | |   ||| ||    | | || |||  | | |||| |||
ATCGCGCAAGAAGGACAAGCTTAGGTATCGTTATCCTCGTGGTGAGTCATACTTGGATGTCATTCAAAGgtat---attttatcttataaatattatttagttc---cttgcttcaacttgcta---gatataaataactcaagttttagtaataatacag

upper sequence: Vv06s0004g06920.t01 (Vitis vinifera), 5'ss of exon 20
lower sequence: GLYMA02G39390.1 (Glycine max), 5'ss of exon 20
GTCACGTAAGAAGGACAAGCTGAGGTATCGGTATCCTCGTGGTGAATCTTACCTGGATGTTATCCAAAGgtttgcaatctgctgttacaaagaatgatttgtcaaaacttaaatattttttccaactgatttattagaataaactttctgcattaatgcag
 || || || |||||||| || |||||||| ||||||||||| || |||||| | |||||||| |||||||        | ||  |   || | |  || ||   ||      || || ||     |||| ||      | || |||    | ||||||||
ATCCCGCAATAAGGACAAACTTAGGTATCGTTATCCTCGTGGAGAGTCTTACTTAGATGTTATTCAAAGgtagatgcattacttcttttaacattatttagttccaaac-ggctacttgtt-----tgatgtaaataggttaaattttaataataatgcag

upper sequence: Vv06s0004g06920.t01 (Vitis vinifera), 5'ss of exon 20
lower sequence: GLYMA14G37520.1 (Glycine max), 5'ss of exon 31
GTCACGTAAGAAGGACAAGCTGAGGTATCGGTATCCTCGTGGTGAATCTTACCTGGATGTTATCCAAAGgtttgcaatctgctgttacaaagaatgatttgtcaaaacttaaatattttttccaactgatttattagaataaactttctgcattaatgcag
 || || || |||||||| || |||||||| ||||||||||| || |||||| | |||||||| |||||||          ||  |   || | |  || ||   ||   |  || ||  |  |  | | | | | ||||    |||    | ||||||||
ATCCCGCAATAAGGACAAACTTAGGTATCGTTATCCTCGTGGAGAGTCTTACTTAGATGTTATTCAAAGgtagatgcatcacttcttttaacattatttagttccaaaccac-tacttgcttgatgtaaataacttgaat----ttttaataataatgcag

upper sequence: Vv06s0004g06920.t01 (Vitis vinifera), 5'ss of exon 20
lower sequence: PP1S414_24V6.1 (Physcomitrella patens), 5'ss of exon 20
GTCACGTAAGAAGGACAAGCTGAGGTATCGGTATCCTCGTGGTGAATCTTACCTGGATGTTATCCAAAGgtttgcaatctgctgttacaaagaatgatttgtcaaaacttaaatattttttccaactgattta-ttagaataaactttctgcattaatgcag---------------------
  ||||||||   || || ||  | ||||| ||||||||||||||||||||| |||| || |||||||||| | |           |     | | | || | |||  ||||  ||  ||||   ||||  |  ||     |||  ||     |   ||  |                     
AGCACGTAAGGCAGATAAACTCCGCTATCGCTATCCTCGTGGTGAATCTTACTTGGACGTCATCCAAAGgtatacctcacatctgcaactgaatttagttcttaaacgttaacgatgatttcactctgagctggttcatgcaaagctttgaagtgtttgatgattattattcgattcttgtag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|352764397|gb|FQ472754.1|FQ472754
EST:     CTGAGGTATCGGTATCCTCGTGGTGAATCTTACCTGGATGTTATCCAAAG                         GCTGGAGCCTGTAATCATTGAGCTTGAACGGCAACGAGCACCTGTTGTAGT
genomic: CTGAGGTATCGGTATCCTCGTGGTGAATCTTACCTGGATGTTATCCAAAGgtttgcaatc ... attaatgcagGCTGGAGCCTGTAATCATTGAGCTTGAACGGCAACGAGCACCTGTTGTAGT
EST: gi|71882349|gb|DT031404.1|DT031404
EST:     CTGAGGTATCGGTATCCTCGTGGTGAATCTTACCTGGATGTTATCCAAAG                         GCTGGAGCCTGTAATCATTGAGCTTGAACGGCAACGAGCACCTGTTGTAGT
genomic: CTGAGGTATCGGTATCCTCGTGGTGAATCTTACCTGGATGTTATCCAAAGgtttgcaatc ... attaatgcagGCTGGAGCCTGTAATCATTGAGCTTGAACGGCAACGAGCACCTGTTGTAGT
EST: gi|352769630|gb|FQ468558.1|FQ468558
EST:     CTGAGGTATCGGTATCCTCGTGGTGAATCTTACCTGGATGTTATCCAAAG                         GCTGGAGCCTGTAATCATTGAGCTTGAACGGCAACGAGCACCTGTTGTAGT
genomic: CTGAGGTATCGGTATCCTCGTGGTGAATCTTACCTGGATGTTATCCAAAGgtttgcaatc ... attaatgcagGCTGGAGCCTGTAATCATTGAGCTTGAACGGCAACGAGCACCTGTTGTAGT
EST: gi|71888454|gb|DT037509.1|DT037509
EST:     CTGAGGTATCGGTATCCTCGTGGTGAATCTTACCTGGATGTTATCCAAAG                         GCTGGAGCCTGTAATCATTGAGCTTGAACGGCAACGAGCACCTGTTGTAGT
genomic: CTGAGGTATCGGTATCCTCGTGGTGAATCTTACCTGGATGTTATCCAAAGgtttgcaatc ... attaatgcagGCTGGAGCCTGTAATCATTGAGCTTGAACGGCAACGAGCACCTGTTGTAGT
EST: gi|352768928|gb|FQ468119.1|FQ468119
EST:     CTGAGGTATCGGTATCCTCGTGGTGAATCTTACCTGGATGTTATCCAAAG                         GCTGGAGCCTGTAATCATTGAGCTTGAACGGCAACGAGCACCTGTTGTAGT
genomic: CTGAGGTATCGGTATCCTCGTGGTGAATCTTACCTGGATGTTATCCAAAGgtttgcaatc ... attaatgcagGCTGGAGCCTGTAATCATTGAGCTTGAACGGCAACGAGCACCTGTTGTAGT
EST: gi|71889378|gb|DT038433.1|DT038433
EST:     CTGAGGTATCGGTATCCTCGTGGTGAATCTTACCTGGATGTTATCCAAAG                         GCTGGAGCCTGTAATCATTGAGCTTGAACGGCAACGAGCACCTGTTGTAGT
genomic: CTGAGGTATCGGTATCCTCGTGGTGAATCTTACCTGGATGTTATCCAAAGgtttgcaatc ... attaatgcagGCTGGAGCCTGTAATCATTGAGCTTGAACGGCAACGAGCACCTGTTGTAGT
EST: gi|71887336|gb|DT036391.1|DT036391
EST:     CTGAGGTATCGGTATCCTCGTGGTGAATCTTACCTGGATGTTATCCAAAG                         GCTGGAGCCTGTAATCATTGAGCTTGAACGGCAACGAGCACCTGTTGTAGT
genomic: CTGAGGTATCGGTATCCTCGTGGTGAATCTTACCTGGATGTTATCCAAAGgtttgcaatc ... attaatgcagGCTGGAGCCTGTAATCATTGAGCTTGAACGGCAACGAGCACCTGTTGTAGT
EST: gi|71887343|gb|DT036398.1|DT036398
EST:     CTGAGGTATCGGTATCCTCGTGGTGAATCTTACCTGGATGTTATCCAAAG                         GCTGGAGCCTGTAATCATTGAGCTTGAACGGCAACGAGCACCTGTTGTAGT
genomic: CTGAGGTATCGGTATCCTCGTGGTGAATCTTACCTGGATGTTATCCAAAGgtttgcaatc ... attaatgcagGCTGGAGCCTGTAATCATTGAGCTTGAACGGCAACGAGCACCTGTTGTAGT
EST: gi|71890359|gb|DT039414.1|DT039414
EST:     CTGAGGTATCGGTATCCTCGTGGTGAATCTTACCTGGATGTTATCCAAAG                         GCTGGAGCCTGTAATCATTGAGCTTGAACGGCAACGAGCACCTGTTGTAGT
genomic: CTGAGGTATCGGTATCCTCGTGGTGAATCTTACCTGGATGTTATCCAAAGgtttgcaatc ... attaatgcagGCTGGAGCCTGTAATCATTGAGCTTGAACGGCAACGAGCACCTGTTGTAGT
EST: gi|34362375|gb|CF403960.1|CF403960
EST:     CTGAGGTATCGGTATCCTCGTGGTGAATCTTACCTGGATGTTATCCAAAG                         GCTGGAGCCTGTAATCATTGAGCTTGAACGGCAACGAGCACCTGTTGTAGT
genomic: CTGAGGTATCGGTATCCTCGTGGTGAATCTTACCTGGATGTTATCCAAAGgtttgcaatc ... attaatgcagGCTGGAGCCTGTAATCATTGAGCTTGAACGGCAACGAGCACCTGTTGTAGT
EST: gi|71887083|gb|DT036138.1|DT036138
EST:     TTACCTGGATGTTATCCAAAG                         GCTGGAGCCTGTAATCATTGAGCTTGAACGGCAACGAGCACCTGTTGTAGT
genomic: TTACCTGGATGTTATCCAAAGgtttgcaatc ... attaatgcagGCTGGAGCCTGTAATCATTGAGCTTGAACGGCAACGAGCACCTGTTGTAGT
EST: gi|110360631|gb|EC923892.1|EC923892
EST:     CTGAGGTATCGGTATCCTCGTGGTGAATCTTACCTGGATGTTATCCAAAG                         GCTGGAGCCTGTAATCATTGAGCTTGAACGGCAACGAGCACCTGTTGTAGT
genomic: CTGAGGTATCGGTATCCTCGTGGTGAATCTTACCTGGATGTTATCCAAAGgtttgcaatc ... attaatgcagGCTGGAGCCTGTAATCATTGAGCTTGAACGGCAACGAGCACCTGTTGTAGT
EST: gi|110415443|gb|EC981352.1|EC981352
EST:     CTGAGGTATCGGTATCCTCGTGGTGAATCTTACCTGGATGTTATCCAAAG                         GCTGGAGCCTGTAATCATTGAGCTTGAACGGCAACGAGCACCTGTTGTAGT
genomic: CTGAGGTATCGGTATCCTCGTGGTGAATCTTACCTGGATGTTATCCAAAGgtttgcaatc ... attaatgcagGCTGGAGCCTGTAATCATTGAGCTTGAACGGCAACGAGCACCTGTTGTAGT
EST: gi|77581485|gb|DV219679.1|DV219679
EST:     CTGAGGTATCGGTATCCTCGTGGTGAATCTTACCTGGATGTTATCCAAAG                         GCTGGAGCCTGTAATCATTGAGCTTGAACGGCAACGAGCACCTGTTGTAGT
genomic: CTGAGGTATCGGTATCCTCGTGGTGAATCTTACCTGGATGTTATCCAAAGgtttgcaatc ... attaatgcagGCTGGAGCCTGTAATCATTGAGCTTGAACGGCAACGAGCACCTGTTGTAGT
EST: gi|352781433|gb|FQ468277.1|FQ468277
EST:     CTGAGGTATCGGTATCCTCGTGGTGAATCTTACCTGGATGTTATCCAAAG                         GCTGGAGCCTGTAATCATTGAGCTTGAACGGCAACGAGCACCTGTTGTAGT
genomic: CTGAGGTATCGGTATCCTCGTGGTGAATCTTACCTGGATGTTATCCAAAGgtttgcaatc ... attaatgcagGCTGGAGCCTGTAATCATTGAGCTTGAACGGCAACGAGCACCTGTTGTAGT
EST: gi|71888451|gb|DT037506.1|DT037506
EST:     CTGAGGTATCGGTATCCTCGTGGTGAATCTTACCTGGATGTTATCCAAAG                         GCTGGAGCCTGTAATCATTGAGCTTGAACGGCAACGAGCACCTGTTGTAGT
genomic: CTGAGGTATCGGTATCCTCGTGGTGAATCTTACCTGGATGTTATCCAAAGgtttgcaatc ... attaatgcagGCTGGAGCCTGTAATCATTGAGCTTGAACGGCAACGAGCACCTGTTGTAGT
EST: gi|71881182|gb|DT030237.1|DT030237
EST:     CTGAGGTATCGGTATCCTCGTGGTGAATCTTACCTGGATGTTATCCAAAG                         GCTGGAGCCTGTAATCATTGAGCTTGAACGGCAACGAGCACCTGTTGTAGT
genomic: CTGAGGTATCGGTATCCTCGTGGTGAATCTTACCTGGATGTTATCCAAAGgtttgcaatc ... attaatgcagGCTGGAGCCTGTAATCATTGAGCTTGAACGGCAACGAGCACCTGTTGTAGT
EST: gi|71885715|gb|DT034770.1|DT034770
EST:     CTGAGGTATCGGTATCCTCGTGGTGAATCTTACCTGGATGTTATCCAAAG                         GCTGGAGCCTGTAATCATTGAGCTTGAACGGCAACGAGCACCTGTTGTAGT
genomic: CTGAGGTATCGGTATCCTCGTGGTGAATCTTACCTGGATGTTATCCAAAGgtttgcaatc ... attaatgcagGCTGGAGCCTGTAATCATTGAGCTTGAACGGCAACGAGCACCTGTTGTAGT
EST: gi|27582400|gb|CB005095.1|CB005095
EST:     CTGAGGTATCGGTATCCTCGTGGTGAATCTTACCTGGATGTTATCCAAAG                         GCTGGAGCCTGTAATCATTGAGCTTGAACGGCAACGAGCACCTGTTGTAGT
genomic: CTGAGGTATCGGTATCCTCGTGGTGAATCTTACCTGGATGTTATCCAAAGgtttgcaatc ... attaatgcagGCTGGAGCCTGTAATCATTGAGCTTGAACGGCAACGAGCACCTGTTGTAGT
EST: gi|352774206|gb|FQ474729.1|FQ474729
EST:     CTGAGGTATCGGTATCCTCGTGGTGAATCTTACCTGGATGTTATCCAAAG                         GCTGGAGCCTGTAATCATTGAGCTTGAACGGCAACGAGCACCTGTTGTAGT
genomic: CTGAGGTATCGGTATCCTCGTGGTGAATCTTACCTGGATGTTATCCAAAGgtttgcaatc ... attaatgcagGCTGGAGCCTGTAATCATTGAGCTTGAACGGCAACGAGCACCTGTTGTAGT
EST: gi|352768854|gb|FQ468045.1|FQ468045
EST:     CTGAGGTATCGGTATCCTCGTGGTGAATCTTACCTGGATGTTATCCAAAG                         GCTGGAGCCTGTAATCATTGAGCTTGAACGGCAACGAGCACCTGTTGTAGT
genomic: CTGAGGTATCGGTATCCTCGTGGTGAATCTTACCTGGATGTTATCCAAAGgtttgcaatc ... attaatgcagGCTGGAGCCTGTAATCATTGAGCTTGAACGGCAACGAGCACCTGTTGTAGT