1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
TCTGCATAAGACAAATTCTTCTGCAGACAGTGCAGGTAAACTGACAGAATCAGAGATCAAAGGGAGAATTAATCGCCTGTCTCAAATTTTGGCAAATAAGgtattattttagtaccaagtacaatctttagaaactttattaattgatgtttctgtttaatcaaaacatcgggccatcagctgctccagactgcaagaaa...
species | Vitis vinifera |
transcript | Vv04s0044g01680.t01 |
intron # | 20 |
splice site | 5' |
intron type | U2 |
EST: CAGAGATCAAAGGGAGAATTAATCGCCTGTCTCAAATTTTGGCAAATAAG GCTACAGTTTCAAAGTTACCAGACAAGGGAGAGAGGATACAAAAGCAGATTEST: gi|30320466|gb|CD003728.1|CD003728
genomic: CAGAGATCAAAGGGAGAATTAATCGCCTGTCTCAAATTTTGGCAAATAAGgtattatttt ... tattcttcagGCTACAGTTTCAAAGTTACCAGACAAGGGAGAGAGGATACAAAAGCAGATT
EST: CAGAGATCAAAGGGAGAATTAATCGCCTGTCTCAAATTTTGGCAAATAAG GCTACAGTTTCAAAGTTACCAGACAAGGGAGAGAGGATACAAAAGCAGATTEST: gi|30321060|gb|CD004322.1|CD004322
genomic: CAGAGATCAAAGGGAGAATTAATCGCCTGTCTCAAATTTTGGCAAATAAGgtattatttt ... tattcttcagGCTACAGTTTCAAAGTTACCAGACAAGGGAGAGAGGATACAAAAGCAGATT
EST: CAGAGATCAAAGGGAGAATTAATCGCCTGTCTCAAATTTTGGCAAATAAG GCTACAGTTTCAAAGTTACCAGACAAGGGAGAGAGGATACAAAAGCAGATTEST: gi|110362483|gb|EC926022.1|EC926022
genomic: CAGAGATCAAAGGGAGAATTAATCGCCTGTCTCAAATTTTGGCAAATAAGgtattatttt ... tattcttcagGCTACAGTTTCAAAGTTACCAGACAAGGGAGAGAGGATACAAAAGCAGATT
EST: CAGAGATCAAAGGGAGAATTAATCGCCTGTCTCAAATTTTGGCAAATAAG GCTACAGTTTCAAAGTTACCAGACAAGGGAGAGAGGATACAAAAGCAGATT
genomic: CAGAGATCAAAGGGAGAATTAATCGCCTGTCTCAAATTTTGGCAAATAAGgtattatttt ... tattcttcagGCTACAGTTTCAAAGTTACCAGACAAGGGAGAGAGGATACAAAAGCAGATT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCTGCATAAGACAAATTCTTCTGCAGACAGTGCAGGTAAACTGACAGAATCAGAGATCAAAGGGAGAATTAATCGCCTGTCTCAAATTTTGGCAAATAAGgtattattttagtaccaagtacaatctttagaaactttattaattgatgtttctgtttaatcaaaacatcgggccatcagctgctccagactgcaagaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttagaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caaaaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcaagaa