Sequence
atgc intronic sequence ATGC exonic sequenceCTGCAAAGCTGTTAAAGAAGCCTGATCAGTGCAGAGCCGTTTATGCATGCTCACATCTCTTCTGGGTTGACGATCAAGATAGCATCAGAGATGGAGAGAGgtgcattactatatccttgacatttacaaagcataacatcttgtgttctcttttgttggatgcgcttttaggtgctatttgtatatgtcccatgtacttt...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv04s0023g03870.t01 (Vitis vinifera), 5'ss of exon 20
lower sequence: GRMZM5G825524_T02 (Zea mays), 5'ss of exon 20
CTGCAAAGCTGTTAAAGAAGCCTGATCAGTGCAGAGCCGTTTATGCATGCTCACATCTCTTCTGGGTTGACGATCAAGATAGCATCAGAGATGGAGAGAGgtgc--attact-atatccttgacattta--caaagcataacatcttgtgttc--tcttttgttggatgcgcttttaggt--gctatttgtatatgtcccatgtacttt
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CAGCAAAACTTCTCAAGAAGCCTGATCAATGCCGAGCAGTTTATGCGTGTTCACATCTTTTCTGGGCTGATGACCAAGATGGGATAATGGATGGTGAAAGgtaaagatgattgatctacatactacttaattggatctcaagttcatattgtccatctttcagtgtctagttttgcaaattaattatttgcacat-tccta--------
upper sequence: Vv04s0023g03870.t01 (Vitis vinifera), 5'ss of exon 20
lower sequence: GLYMA11G08390.1 (Glycine max), 5'ss of exon 19
CTGCAAAGCTGTTAAAGAAGCCTGATCAGTGCAGAGCCGTTTATGCATGCTCACATCTCTTCTGGGTTGACGATCAAGATAGCATCAGAGATGGAGAGAGgtgcattactatatccttgacatttacaaagcataaca-tcttgtgttctcttttgttggatgcgcttttaggtgctatttgtatat-gtcccatgtacttt
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CAGCAAAGCTTTTAAAGAAGCCAGATCAATGCAGAGCTGTGTATGCATGCTCACATCTGTTTTGGGTTGATGATCATGATAACATGAAAGATGGAGAGAGgtttgtttccgttgacatgacttttatgagattttagacttctatggaatgcttgtttctttgcagtgctatgc-ttgtttctttgcagtagcttgtaaga-
upper sequence: Vv04s0023g03870.t01 (Vitis vinifera), 5'ss of exon 20
lower sequence: GLYMA01G36870.1 (Glycine max), 5'ss of exon 19
CTGCAAAGCTGTTAAAGAAGCCTGATCAGTGCAGAGCCGTTTATGCATGCTCACATCTCTTCTGGGTTGACGATCAAGATAGCATCAGAGATGGAGAGAGgtgcattactatatccttgacatttacaaagcataaca-tcttgtgttctcttttgttggatgcgcttttaggtgctatttgtatatgtcccatgtacttt--
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CAGCAAAGCTTTTAAAGAAGCCAGATCAATGCAGAGCTGTGTATGCATGCTCACATCTGTTTTGGGTTGATGATCATGATAACATGAAAGATGGAGAGAGgtttgtttccattgacatgacttctgtgagatttttgacttctatggaatgcttgtttctttgcagtgcta--tgcttgtaagat-tgttctgggttttttgt
upper sequence: Vv04s0023g03870.t01 (Vitis vinifera), 5'ss of exon 20
lower sequence: AT3G51310.1 (Arabidopsis thaliana), 5'ss of exon 19
CTGCAAAGCTGTTAAAGAAGCCTGATCAGTGCAGAGCCGTTTATGCATGCTCACATCTCTTCTGGGTTGACGATCAAGATAGCATCAGAGATGGAGAGAGgtgcattactatatccttg-acatttacaaagcataacatcttgtgttctcttttgttggatg--cgcttttag--------gtgctatttgtatatgtcccatgtacttt--------------------
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CTGCAAGACTCCTAAGGAAGCCAGATCAGTGTAGAGCTGTTTATGAATGTGCGCATCTCTTCTGGGCTGACGAATGCGAGAACCTGAAAGATGGAGAGAGgtatgtacacatatgaatgtatactcttaacatactaaatctcaaagttaagattggtagctgtacgcaactaataaggggagaaaaattgaggcatattgagagtttgttgggggtttttgggataccagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|71883804|gb|DT032859.1|DT032859EST: TCACATCTCTTCTGGGTTGACGATCAAGATAGCATCAGAGATGGAGAGAG GGTCCTGCTCTGCCTGAAGCGTGCTTTAAGAATTGCAAATGCTGCTCAACA
genomic: TCACATCTCTTCTGGGTTGACGATCAAGATAGCATCAGAGATGGAGAGAGgtgcattact ... gtttctccagGGTCCTGCTCTGCCTGAAGCGTGCTTTAAGAATTGCAAATGCTGCTCAACA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CTGCAAAGCTGTTAAAGAAGCCTGATCAGTGCAGAGCCGTTTATGCATGCTCACATCTCTTCTGGGTTGACGATCAAGATAGCATCAGAGATGGAGAGAGgtgcattactatatccttgacatttacaaagcataacatcttgtgttctcttttgttggatgcgcttttaggtgctatttgtatatgtcccatgtacttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -acaaagca