Sequence
atgc intronic sequence ATGC exonic sequenceAGTGGTGCGAAGGACAGGTTACAGAGTACTTGGTTGCAACATTTGGTGATTATTTTATGGATGTGAAGATgtaagtcctctctcagatctggataaccctattctttagctttaacctatattacatgaactaaagcatgattttttggtatggggatctatcattcttt...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv03s0097g00670.t01 (Vitis vinifera), 5'ss of exon 20
lower sequence: GLYMA03G03120.2 (Glycine max), 5'ss of exon 21
AGTGGTGCGAAGGACAGGTTACAGAGTACTTGGTTGCAACATTTGGTGATTATTTTATGGATGTGAAGATgtaagtcctctctcagatctggataaccc--tattctttagctttaacctatattacatgaactaaagcatgatt-ttttggtatggggatctatcattcttt-----
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AATGGAGTGAGGGGCAGGTTACTGAGTACTTGGTTGCAACATTTGGTGACTATTTTGGTGATGTAAAAATgtgagtatattttcttgtctcagtaatttgacattgtttattttt--------ccatatgtgctatcccatatttcttctgccagctttctctgttttttttttttgt
upper sequence: Vv03s0097g00670.t01 (Vitis vinifera), 5'ss of exon 20
lower sequence: AT1G71820.1 (Arabidopsis thaliana), 5'ss of exon 21
AGTGGTGCGAAGGACAGGTTACAGAGTACTTGGTTGCAACATTTGGTGATTATTTTATGGATGTGAAGATgtaagtcctctctcagatctggataaccctattctttagctttaacctatattac-atgaactaaagcatgattttttggtatggggatctatcattcttt
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AATGGTGCGAGGGACAGGTTACCGAGTACCTCGTGGCAACTTTCGGTGATTATTTCACAGATGTGAAAATgtaagtttttctt----------tcccccttttgtttaacaagagccaaaaatgctacaagtctattgaagatgtcgtggt----gaatactggatgcag-
upper sequence: Vv03s0097g00670.t01 (Vitis vinifera), 5'ss of exon 20
lower sequence: EFJ12004 (Selaginella moellendorffii), 5'ss of exon 19
AGTGGTGCGAAGGACAGGTTACAGAGTACTTGGTTGCAACATTTGGTGATTATTTTATGGATGTGAAGATgtaagtcctctctcagatctggataaccctattctttagctttaacctatattacatgaactaaagcatgattttttggtatggggatctatcattcttt
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ATTGGCATGAAGGACTTGTGACCGAGTACCTGGTTGCAACATTTGGCGATTACTTTGGGGATGTAAAGATgtgagac-------acgattaacctacccgactttcaatgtgcgtgttgcag------------------------------------------------
upper sequence: Vv03s0097g00670.t01 (Vitis vinifera), 5'ss of exon 20
lower sequence: EFJ08885 (Selaginella moellendorffii), 5'ss of exon 19
AGTGGTGCGAAGGACAGGTTACAGAGTACTTGGTTGCAACATTTGGTGATTATTTTATGGATGTGAAGATgtaagtcctctctcagatctggataaccctattctttagctttaacctatattacatgaactaaagcatgattttttggtatggggatctatcattcttt
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ATTGGCATGAAGGACTTGTGACCGAGTACCTGGTTGCAACATTTGGCGATTACTTTGGGGATGTAAAGATgtgagacacgattaa---ccgagctacccgactttcaatgtgcgttttgcag------------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|87583918|gb|DY473281.1|DY473281EST: ACAGAGTACTTGGTTGCAACATTTGGTGATTATTTTATGGATGTGAAGAT GTACATTGAAGAAAGATCATTTAGGAGATTTGTTGAAGCTTGCCTGGAAGA
genomic: ACAGAGTACTTGGTTGCAACATTTGGTGATTATTTTATGGATGTGAAGATgtaagtcctc ... tgtgacaaagGTACATTGAAGAAAGATCATTTAGGAGATTTGTTGAAGCTTGCCTGGAAGA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AGTGGTGCGAAGGACAGGTTACAGAGTACTTGGTTGCAACATTTGGTGATTATTTTATGGATGTGAAGATgtaagtcctctctcagatctggataaccctattctttagctttaacctatattacatgaactaaagcatgattttttggtatggggatctatcattcttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctctctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggataac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aactaaa