Sequence
atgc intronic sequence ATGC exonic sequenceTGCTTCAGCTGGTGTTCAGTATGATAAAGAGTTTATTGTATGCTCTCTCGACTTGCTGTCTGGACTTGCAGAAGGTCTTGGTAGTGGGATAGAGAGTTTGgtatttccctttctccacaatttttggatctggaagttacattagacaaggtgtttttatgaacaaaagttatccgccagttcttatttttgaaattgta...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv03s0038g02830.t01 (Vitis vinifera), 5'ss of exon 20
lower sequence: GRMZM2G376731_T01 (Zea mays), 5'ss of exon 20
TGCTTCAGCTGGTGTTCAGTATGATAAAGAGTTTATTGTATGCTCTCTCGACTTGCTGTCTGGACTTGCAGAAGGTCTTGGTAGTGGGATAGAGAGTTTGgtatttccctttctccaca------atttttggatctggaagttacattagacaaggtgtttttatgaacaaaagttatccgccagttcttatttttgaaattgta
| || ||||||||| |||||||| ||| || ||||| || || | ||| | |||||||||||||||||||||||||| ||| || || ||| | ||| | | | || || ||| || || | |||| | ||| | || || | | | || | | || | |||
TACTGCAGCTGGTGCGGTGTATGATAGAGAATTCATTGTTTGTTCGTTGGACCTACTGTCTGGACTTGCAGAAGGTCTTGGCGCTGGTATTGAAAGTCTTgtaagttcttgcctttgcatatggtattgttttccctttcaagtacac-aaacacaccactcacatacccacatgggtgcgtccggggtggagtt---agatta--
upper sequence: Vv03s0038g02830.t01 (Vitis vinifera), 5'ss of exon 20
lower sequence: GLYMA10G42960.1 (Glycine max), 5'ss of exon 20
TGCTTCAGCTGGTGTTCAGTATGATAAAGAGTTTATTGTATGCTCTCTCGACTTGCTGTCTGGACTTGCAGAAGGTCTTGGTAGTGGGATAGAGAGTTTGgtatttccctttctccacaatttttggatctggaagttacattagacaaggtgtttttatgaacaaa-----agttatccgc-cagttcttatttttgaaattgta----
|| | | || ||||||||||| || |||||||||||||||||||| || ||||| |||||||| ||||| |||||||| ||||||||||||||||||||| | |||| ||||| | | | | | || ||| | | | | | | | |||| || ||| | ||| | ||||||| | ||
CGCCACCACAGGGGTTCAGTATGACAAGGAGTTTATTGTATGCTCTCTTGATTTGCTTTCTGGACTAGCAGAGGGTCTTGGCAGTGGGATAGAGAGTTTGgtactca------tccaaaatttgtatttttt----tgatatgagatcatgattctctgttagcaaattatttgtcatcttctcagatgttattttcccagaaatatttg
upper sequence: Vv03s0038g02830.t01 (Vitis vinifera), 5'ss of exon 20
lower sequence: GLYMA20G24040.1 (Glycine max), 5'ss of exon 20
TGCTTCAGCTGGTGTTCAGTATGATAAAGAGTTTATTGTATGCTCTCTCGACTTGCTGTCTGGACTTGCAGAAGGTCTTGGTAGTGGGATAGAGAGTTTGgtatttccctttctccacaatttttggatctggaagttacattagacaaggtgtttttatgaacaaaagttatccgccagttct-----tatttt---tgaaat-tgta---
|| | | || ||||||||||| || |||||||||||||||||||| || ||||| |||||||| ||||| |||||||| ||||| ||||||||||||||| | |||| ||||| | | | | || ||| | | | | | | | |||| |||| | || ||| |||||| |||||| |||
CGCCACCACAGGGGTTCAGTATGACAAGGAGTTTATTGTATGCTCTCTTGATTTGCTTTCTGGACTAGCAGAGGGTCTTGGCAGTGGAATAGAGAGTTTGgtactca------tccaaaatttgtattttttaga----tatgagatcatgcttctctgttagcaaa--ttatttgacatctctgatgttattttccctgaaatatgtgttc
upper sequence: Vv03s0038g02830.t01 (Vitis vinifera), 5'ss of exon 20
lower sequence: AT2G16950.2 (Arabidopsis thaliana), 5'ss of exon 20
TGCTTCAGCTGGTGTTCAGTATGATAAAGAGTTTATTGTATGCTCTCTCGACTTGCTGTCTGGACTTGCAGAAGGTCTTGGTAGTGGGATAGAGAGTTTGgtatttccctttctccacaatttttggatctggaagttacattagacaaggtgtttttatgaacaaaagttatc----cgccagttcttatttttgaaattgta-------------------------------------------------------------------------------------------------
|||||| ||||| | ||||||||| | ||| |||||||| || ||||| || ||||| ||||||||||| ||||| ||||| |||||||||||| | ||||| |||| ||| | | | ||| | | | ||| | ||| | |||| ||| |||| | | | || || || || |
TGCTTCTGCTGGGGCTCAGTATGACAGAGAATTTATTGTTTGTTCTCTTGATTTGCTTTCTGGACTTGCTGAAGGGCTTGGCAGTGGGATAGAGTCTCTGgtacttcctttttttgatg--tcttgcacttactatttattactcataagttcaccaactgaataaattttataattgctctggccattgttgttcgtataacatgattgagttgatggttatgtgtctaatttatggaggataacacaattgagttgatttcctaaaccagatatattcttattttatcgctctatgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|34550426|gb|CF518644.1|CF518644EST: ACTTGCTGTCCGGACTTGCAGAAGGTCTTGGTAGTGGGATAGAGAGTTTG GTTGCGCAAAGCAGCTTGAGGGATCTCCTCCTGCAATGTTGTATGGATGAT
genomic: ACTTGCTGTCTGGACTTGCAGAAGGTCTTGGTAGTGGGATAGAGAGTTTGgtatttccct ... ttttctgcagGTTGCGCAAAGCAGCTTGAGGGATCTCCTCCTGCAATGTTGTATGGATGAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGCTTCAGCTGGTGTTCAGTATGATAAAGAGTTTATTGTATGCTCTCTCGACTTGCTGTCTGGACTTGCAGAAGGTCTTGGTAGTGGGATAGAGAGTTTGgtatttccctttctccacaatttttggatctggaagttacattagacaaggtgtttttatgaacaaaagttatccgccagttcttatttttgaaattgta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccctttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aacaaaa