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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGAAACGTAACACAGAGCATGACCCACCTTACTGGAGAGGTCCAATTTGGATGAACATGAATTACAGGATTCTTTCTGCACTCCACCATTATTCCCAAGgtaatatttatctggaaaaacagacaaaaacacacaagaaactctcttactgaaattttcaagcttgaagatttgaatatctccatttgcatttacactttttttcctgatgcttgcgggtggttttggttgaattcctgcag

Basic information

species Vitis vinifera
transcript Vv01s0010g03300.t01
intron # 20
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv01s0010g03300.t01 (Vitis vinifera), 5'ss of exon 20
lower sequence: GRMZM2G071675_T01 (Zea mays), 5'ss of exon 3
ATGAAACGTAACACAGAGCATGACCCACCTTACTGGAGAGGTCCAATTTGGATGAACATGAATTACAGGATTCTTTCTGCACTCCACCATTATTCCCAAGgtaatatttatctggaaaaacagacaaaaacacacaagaaactctcttactgaaattttcaagcttgaagatttgaatatctccatttgcatttacactttttttcctgatgcttgcgggtggttttggttgaattcctgcag
||||| ||||| |||||||||||||| ||||| ||||||||| | |||||||| |||||||| |||| | ||||||| ||||| || || ||| | ||  ||||  | | |    |    |      | || |     |||| ||  | |||  ||  | |    |     | ||  |  ||  |                                                          
ATGAAGCGTAATACAGAGCATGACCCCCCTTATTGGAGAGGTGCCATTTGGATAAACATGAACTACATGGTTCTTTCGGCACTACATCACTATGCACATAgtaagctcttt---aattgcctagtttataccctttgcaaacccttctgctggcataatgata--tagcattctgctttcctgtag---------------------------------------------------------

upper sequence: Vv01s0010g03300.t01 (Vitis vinifera), 5'ss of exon 20
lower sequence: GLYMA05G27900.1 (Glycine max), 5'ss of exon 20
ATGAAACGTAACACAGAGCATGACCCACCTTACTGGAGAGGTCCAATTTGGATGAACATGAATTACAGGATTCTTTCTGCACTCCACCATTATTCCCAAGgtaatatttatctggaaaaacagacaaaaacacacaagaaactctcttactgaaattttcaagcttgaagatttgaatatctccatttgcatttacactttttttcctgatgcttgcgggtggttttggttgaattcctgcag
|||||||  ||||||||||||||||| || ||||||||||| ||| ||||||| |||||||||||||| |||||||| |||||||||||||| ||| ||||||||||  |   |  ||  ||   ||| |    |||  |    ||  ||| | |||||  | |||     ||   | |      ||||  || |  ||| |                                         
ATGAAACACAACACAGAGCATGACCCTCCATACTGGAGAGGCCCAGTTTGGATAAACATGAATTACAGAATTCTTTCAGCACTCCACCATTACTCCAAAGgtaatatggactggccaaggca---aaatatctgcaaata---ttcccact-atattttgtaccttcctctttctgaaactaatctttgggttgagtcttgtag---------------------------------------

upper sequence: Vv01s0010g03300.t01 (Vitis vinifera), 5'ss of exon 20
lower sequence: GLYMA08G10870.2 (Glycine max), 5'ss of exon 22
ATGAAACGTAACACAGAGCATGACCCACCTTACTGGAGAGGTCCAATTTGGATGAACATGAATTACAGGATTCTTTCTGCACTCCACCATTATTCCCAAGgtaatatttatctggaaaaacagacaaaaacacacaagaaactctcttactgaaattttcaagcttgaagatttgaatatctccatttgcatttacactttttttcctgatgcttgcgggtggttttggttgaattcctgcag
||||| |  ||||||||||||||||| || ||||||||||||||  ||||||| |||||||||||||| |||| ||| |||||||||||||| ||| ||||||||||  |   |  ||  |    ||||| |  |   |||   ||  ||| | ||||  |  ||     |  | ||| | |   ||     ||  |                                              
ATGAAGCACAACACAGAGCATGACCCTCCATACTGGAGAGGTCCTGTTTGGATAAACATGAATTACAGAATTCCTTCCGCACTCCACCATTACTCCAAAGgtaatatggactggccaaggc---taaaaatat-ctgcaaatattcccact-atatttataccctcctgaaactaaatttttggtttaaatcttgtag---------------------------------------------

upper sequence: Vv01s0010g03300.t01 (Vitis vinifera), 5'ss of exon 20
lower sequence: GLYMA05G27900.2 (Glycine max), 5'ss of exon 20
ATGAAACGTAACACAGAGCATGACCCACCTTACTGGAGAGGTCCAATTTGGATGAACATGAATTACAGGATTCTTTCTGCACTCCACCATTATTCCCAAGgtaatatttatctggaaaaacagacaaaaacacacaagaaactctcttactgaaattttcaagcttgaagatttgaatatctccatttgcatttacactttttttcctgatgcttgcgggtggttttggttgaattcctgcag
                |||||||||| || ||||||||||| ||| ||||||| |||||||||||||| |||||||| |||||||||||||| ||| ||||||||||  |   |  ||  ||   ||| |    |||  |    ||  ||| | |||||  | |||     ||   | |      ||||  || |  ||| |                                         
----------------AGCATGACCCTCCATACTGGAGAGGCCCAGTTTGGATAAACATGAATTACAGAATTCTTTCAGCACTCCACCATTACTCCAAAGgtaatatggactggccaaggca---aaatatctgcaaata---ttcccact-atattttgtaccttcctctttctgaaactaatctttgggttgagtcttgtag---------------------------------------

upper sequence: Vv01s0010g03300.t01 (Vitis vinifera), 5'ss of exon 20
lower sequence: GLYMA05G27890.1 (Glycine max), 5'ss of exon 20
ATGAAACGTAACACAGAGCATGACCCACCTTACTGGAGAGGTCCAATTTGGATGAACATGAATTACAGGATTCTTTCTGCACTCCACCATTATTCCCAAGgtaatatttatctggaaaaacagacaaaaacacacaagaaactctctt-actgaaattttcaagcttgaagatttgaatatctccatttgcatttacactttttttcctgatgcttgcgggtggttttggttgaattcctgcag
||||||   ||| | |||| |||    || || |||||||||| ||||||||| |||||||||||||| |||||||| || ||||||||||| ||| ||||||||||  |   |   |  ||   ||| |    |||  |  || ||| | | | |  ||   |  ||||  ||  |                                                                   
ATGAAATTCAACTCTGAGCTTGAGGGTCCATATTGGAGAGGTCAAATTTGGATAAACATGAATTACAGAATTCTTTCAGCGCTCCACCATTACTCCAAAGgtaatatgaactggcctaggca---aaatatctgcaaatatttcacttcattcataccttgtgg--tgaatgttgtag------------------------------------------------------------------

upper sequence: Vv01s0010g03300.t01 (Vitis vinifera), 5'ss of exon 20
lower sequence: EFJ24054 (Selaginella moellendorffii), 5'ss of exon 21
ATGAAACGTAACACAGAGCATGACCCACCTTACTGGAGAGGTCCAATTTGGATGAACATGAATTACAGGATTCTTTCTGCACTCCACCATTATTCCCAAGgtaatatttatctggaaaaacagacaaaaacacacaagaaactctcttactgaaattttcaagcttgaagatttgaatatctccatttgcatttacactttttttcctgatgcttgcgggtggttttggttgaattcctgcag
|  | ||||||||| ||||||||| | |||||||||||||| ||  | ||||| |||||||| ||     | |||||  | || ||| | || || ||||||||    | |   ||      |    || |    |    |  | ||   ||   || |                                                                                    
AACAGACGTAACACCGAGCATGACGCTCCTTACTGGAGAGGCCCTGTATGGATCAACATGAACTATCTCGTCCTTTCATCCCTTCACTACTACTCGCAAGgtaacgcgtgt---gacttttggctgcaagcgtttattccatccactgtgtgtgtttctag----------------------------------------------------------------------------------