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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTCGATCAATTTCCAACAGCCAAGTTTCATGTCTGAACTCGACATCCAGATCCCCACTGCTTTTGgtatgctaatatgatgaacttgcttgtgtacaaatttttccaattatgttcttaaagtttggttggtgtctacttcttttgcaactctgattaatggtctatgttatattcttccaatattag

Basic information

species Vitis vinifera
transcript Vv19s0177g00100.t01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv19s0177g00100.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: LOC_Os07g34589.2 (Oryza sativa), 5'ss of exon 2
-----------GTTCGATCAATTTCCAACAGCCAAGTTTCATGTCTGAACTCGACATCCAGATCCCCACTGCTTTTGgtatgctaatatgatgaacttgcttgtgtacaaatttttccaattatgttcttaaagtttggttggtgtctacttcttttgcaactctgattaatggtctatgttatattcttccaatattag
           | | |  | | || || |||| ||||||||||||||| |||||||| |||||||| ||||| || |||||||  || |  |   ||| | | | |   |  |  ||  |    || | |  | | |   || |    |  | ||    |||    |                                 
TTCTTGGTGTAGCTTG--CCACTTTCACCAGCAAAGTTTCATGTCTGATCTCGACATTCAGATCCCAACTGCCTTCGgtatgc--atgttgttctcttccctctttgtga--tggtctga----gtgcctggaatatttgtgctcatcatgttttcctgaacatgtacag------------------------------

upper sequence: Vv19s0177g00100.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GRMZM5G835323_T02 (Zea mays), 5'ss of exon 2
-----------GTTCGATCAATTTCCAACAGCCAAGTTT-CATGTCTGAACTCGACATCCAGATCCCCACTGCTTTTGgtatgctaatatgatgaacttgcttgt-gtacaaatttttccaattatgttcttaaagtttggttggtgtctacttcttttgcaactctgattaatggtctatgttatattcttccaatattag
           | | |  | | |  || ||  ||||||| ||||||||| |||||||| |||||||| ||||| || |||| |||| |   |     || ||| | || ||  | |   |  ||  |    | | |  |||     |   || |    | ||  ||| | ||||   |  |   |  | | | ||       
CTCTTGGTGTAGCTTG--CCACTCTCACCAATCAAGTTTTCATGTCTGATCTCGACATTCAGATCCCAACTGCCTTCGgtacgctagttgaaattgttttcttctagttcagctgtcgtc--tttcggctgtgatgcctggaacacgaacacgtgcggttca-ttctaactaatctgcattcacacgtacatacag------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22011062|gb|BQ796096.1|BQ796096
EST:     ACAGCCAAGTTTCATGTCTGAACTCGACATCCAGATCCCCACTGCTTTTG                         ATCCGTTTGCTGAGGCAAATGCTGAGGACTCAGGTGCTGGGTCAAAAGATT
genomic: ACAGCCAAGTTTCATGTCTGAACTCGACATCCAGATCCCCACTGCTTTTGgtatgctaat ... ccaatattagATCCGTTTGCTGAGGCAAATGCTGAGGACTCAGGTGCTGGGTCAAAAGATT
EST: gi|32457673|gb|CD798847.1|CD798847
EST:     AGCCAAGTTTCATGTCTGTGAACTCGACATCCAGATCCCCACTGCTTTTG                         ATCCGTTTGCTGAGGCAAATGCTGAGGACTCAGGTGCTGAGTCAAAAGATT
genomic: AGCCAAGTTTCATGTC--TGAACTCGACATCCAGATCCCCACTGCTTTTGgtatgctaat ... ccaatattagATCCGTTTGCTGAGGCAAATGCTGAGGACTCAGGTGCTGGGTCAAAAGATT
EST: gi|34414969|gb|CF413723.1|CF413723
EST:     TTTCATGTCTGAACTCGACATCCAGATCCCCACTGCTTTTG                         ATCCGTTTGCTGAGGCAAATGCTGAGGACTCAGGTGCTGGGTCAAAAGATT
genomic: TTTCATGTCTGAACTCGACATCCAGATCCCCACTGCTTTTGgtatgctaat ... ccaatattagATCCGTTTGCTGAGGCAAATGCTGAGGACTCAGGTGCTGGGTCAAAAGATT
EST: gi|22010321|gb|BQ795355.1|BQ795355
EST:     AACTCGACATCCAGATCCCCACTGCTTTTG                         ATCCGTTTGCTGAGGCAAATGCTGAGGACTCAGGTGCTGGGTCAAAAGATT
genomic: AACTCGACATCCAGATCCCCACTGCTTTTGgtatgctaat ... ccaatattagATCCGTTTGCTGAGGCAAATGCTGAGGACTCAGGTGCTGGGTCAAAAGATT
EST: gi|27586671|gb|CB009366.1|CB009366
EST:     ACAGCCAAGTTTCATGTCTGAACTCGACATCCAGATCCCCACTGCTTTTG                         ATCCGTTTGCTGAGGCAAATGCTGAGGACTCAGGTGCTGGGTCAAAAGATT
genomic: ACAGCCAAGTTTCATGTCTGAACTCGACATCCAGATCCCCACTGCTTTTGgtatgctaat ... ccaatattagATCCGTTTGCTGAGGCAAATGCTGAGGACTCAGGTGCTGGGTCAAAAGATT
EST: gi|110397208|gb|EC962936.1|EC962936
EST:     ACAGCCAAGTTTCATGTCTGAACTCGACATCCAGATCCCCACTGCTTTTG                         ATCCGTTTGCTGAGGCAAATGCTGAGGACTCAGGTGCTGGGTCAAAAGATT
genomic: ACAGCCAAGTTTCATGTCTGAACTCGACATCCAGATCCCCACTGCTTTTGgtatgctaat ... ccaatattagATCCGTTTGCTGAGGCAAATGCTGAGGACTCAGGTGCTGGGTCAAAAGATT
EST: gi|22013158|gb|BQ798207.1|BQ798207
EST:     GATCCCCACTGCTTTTG                         ATCCGTTTGCTGAGGCAAATGCTGAGGACTCAGGTGCTGGGTCAAAAGATT
genomic: GATCCCCACTGCTTTTGgtatgctaat ... ccaatattagATCCGTTTGCTGAGGCAAATGCTGAGGACTCAGGTGCTGGGTCAAAAGATT
EST: gi|110408072|gb|EC973693.1|EC973693
EST:     TCGACATCCAGATCCCCACTGCTTTTG                         ATCCGTTTGCTGAGGCAAATGCTGAGGACTCAGGTGCTGGGTCAAAAGATT
genomic: TCGACATCCAGATCCCCACTGCTTTTGgtatgctaat ... ccaatattagATCCGTTTGCTGAGGCAAATGCTGAGGACTCAGGTGCTGGGTCAAAAGATT
EST: gi|30296517|gb|CB973311.1|CB973311
EST:     TCATGTCTGAACTCGANATCCAGATCCCCACTGCTTTTG                         ATCCGTTTGCTGAGGCAAATGCTGAGGACTCAGGTGCTGGGTCAAAAGATT
genomic: TCATGTCTGAACTCGACATCCAGATCCCCACTGCTTTTGgtatgctaat ... ccaatattagATCCGTTTGCTGAGGCAAATGCTGAGGACTCAGGTGCTGGGTCAAAAGATT
EST: gi|110375483|gb|EC940472.1|EC940472
EST:     ACAGCCAAGTTTCATGTCTGAACTCGACATCCAGATCCCCACTGCTTTTG                         ATCCGTTTGCTGAGGCAAATGCTGAGGACTCAGGTGCTGGGTCAAAAGATT
genomic: ACAGCCAAGTTTCATGTCTGAACTCGACATCCAGATCCCCACTGCTTTTGgtatgctaat ... ccaatattagATCCGTTTGCTGAGGCAAATGCTGAGGACTCAGGTGCTGGGTCAAAAGATT
EST: gi|110402223|gb|EC959593.1|EC959593
EST:     ACAGCCAAGTTTCATGTCTGAACTCGACATCCAGATCCCCACTGCTTTTG                         ATCCGTTTGCTGAGGCAAATGCTGAGGACTCAGGTGCTGGGTCAAAAGATT
genomic: ACAGCCAAGTTTCATGTCTGAACTCGACATCCAGATCCCCACTGCTTTTGgtatgctaat ... ccaatattagATCCGTTTGCTGAGGCAAATGCTGAGGACTCAGGTGCTGGGTCAAAAGATT
EST: gi|30296476|gb|CB973270.1|CB973270
EST:     ACAGCCAAGTTTCATGTCTGAACTCGACATCCAGATCCCCACTGCTTTTG                         ATCCGTTTGCTGAGGCAAATGCTGAGGACTCAGGTGCTGGGTCAAAAGATT
genomic: ACAGCCAAGTTTCATGTCTGAACTCGACATCCAGATCCCCACTGCTTTTGgtatgctaat ... ccaatattagATCCGTTTGCTGAGGCAAATGCTGAGGACTCAGGTGCTGGGTCAAAAGATT
EST: gi|22011007|gb|BQ796041.1|BQ796041
EST:     ACAGCCAAGTTTCATGTCTGAACTCGACATCCAGATCCCCACTGCTTTTG                         ATCCGTTTGCTGAGGCAAATGCTGAGGACTCAGGTGCTGGGTCAAAAGATT
genomic: ACAGCCAAGTTTCATGTCTGAACTCGACATCCAGATCCCCACTGCTTTTGgtatgctaat ... ccaatattagATCCGTTTGCTGAGGCAAATGCTGAGGACTCAGGTGCTGGGTCAAAAGATT
EST: gi|22010208|gb|BQ795242.1|BQ795242
EST:     AAGTTTCATGTCTGAACTCGACATCCAGATCCCCACTGCTTTTG                         ATCCGTTTGCTGAGGCAAATGCTGAGGACTCAGGTGCTGGGTCAAAAGATT
genomic: AAGTTTCATGTCTGAACTCGACATCCAGATCCCCACTGCTTTTGgtatgctaat ... ccaatattagATCCGTTTGCTGAGGCAAATGCTGAGGACTCAGGTGCTGGGTCAAAAGATT
EST: gi|22008034|gb|BQ793068.1|BQ793068
EST:     ACAGCCAAGTTTCATGTTTGAACTCGACATCCAGATCCCCACTGCTTTTG                         ATCCGTTTGCTGAGGCAAATGCTGAGGACTCAGGTGCTGGGTCAAAAGATT
genomic: ACAGCCAAGTTTCATGTCTGAACTCGACATCCAGATCCCCACTGCTTTTGgtatgctaat ... ccaatattagATCCGTTTGCTGAGGCAAATGCTGAGGACTCAGGTGCTGGGTCAAAAGATT
EST: gi|110402090|gb|EC968723.1|EC968723
EST:     ACAGCCAAGTTTCATGTCTGAACTCGACATCCAGATCCCCACTGCTTTTG                         ATCCGTTTGCTGAGGCAAATGCTGAGGACTCAGGTGCTGGGTCAAAAGATT
genomic: ACAGCCAAGTTTCATGTCTGAACTCGACATCCAGATCCCCACTGCTTTTGgtatgctaat ... ccaatattagATCCGTTTGCTGAGGCAAATGCTGAGGACTCAGGTGCTGGGTCAAAAGATT
EST: gi|110407800|gb|EC973415.1|EC973415
EST:     TCGACATCCAGATCCCCACTGCTTTTG                         ATCCGTTTGCTGAGGCAAATGCTGAGGACTCAGGTGCTGGGTCAAAAGATT
genomic: TCGACATCCAGATCCCCACTGCTTTTGgtatgctaat ... ccaatattagATCCGTTTGCTGAGGCAAATGCTGAGGACTCAGGTGCTGGGTCAAAAGATT