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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGCGTGAGTTAGCTGAAAAGGAGTCTGAGAATGGTGTCTTCAAAATGCTCCGCAGTGATGTTACTCGTTTCTTAACGACTATACTTATAGGCACAACgtaatgtcattttcgttgttgacattatggtttatcatgttttcagattcgatttgattttgtttcttatcatagatattgtttatgttctcag

Basic information

species Vitis vinifera
transcript Vv19s0090g01820.t01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv19s0090g01820.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: LOC_Os03g39640.1 (Oryza sativa), 5'ss of exon 2
GTGCGTGAGTTAGCTGAAAAGGAGTCTGAGAATGGTGTCTTCAAAATGCTCCGCAGTGATGTTACTCGTTTCTTAACGACTATACTTATAGGCACAACgtaatgtc----attttcgt-tgttgacattatggtt-tatcatgttttcagattcgatttgattttgtttcttatcatagatattgtttatgttctcag
|| |||||||| |||||||||||  |||| |||||||| |||| ||||||||| |||||||||||||| ||| | || || ||||| || ||||||||||||| |     |  |  || |  || |||  |  || |||  | |||  | | || || | || |  ||   |   ||  |||      || | |    
GTTCGTGAGTTGGCTGAAAAGGAACCTGAAAATGGTGTTTTCAGAATGCTCCGAAGTGATGTTACTCGCTTCCTGACAACCATACTCATTGGCACAACgtaatttattaaacctatgtgttctgccatgtttattatattttttttctataatccatattatgtcattgagttcaatccatacccacaatatgccact

upper sequence: Vv19s0090g01820.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA02G46780.1 (Glycine max), 5'ss of exon 2
GTGCGTGAGTTAGCTGAAAAGGAGTCTGAGAATGGTGTCTTCAAAATGCTCCGCAGTGATGTTACTCGTTTCTTAACGACTATACTTATAGGCACAACgtaatgtcattt--tcgttgttgacattatggtttatcatgttttcagattcgatttgattttgtttcttatcatagatattgtttatgttctcag
|| |||||||| ||||||||||||||||| || |||||||||| | | ||||| |||||||||||||| ||| | || || |||||||| ||||||||||| | || ||   | | | ||  ||||      |||||| |||||||  | || |       |||||| ||  ||| |||| | | |||   |||
GTTCGTGAGTTGGCTGAAAAGGAGTCTGAAAACGGTGTCTTCAGACTACTCCGAAGTGATGTTACTCGGTTCCTTACCACAATACTTATTGGCACAACgtattctccttgcattgatcttatcattgaaaaatatcattttttcagtatagaat-------gtttctcatgctag-tattttgt-tgtatgcag

upper sequence: Vv19s0090g01820.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA14G01920.1 (Glycine max), 5'ss of exon 2
GTGCGTGAGTTAGCTGAAAAGGAGTCTGAGAATGGTGTCTTCAAAATGCTCCGCAGTGATGTTACTCGTTTCTTAACGACTATACTTATAGGCACAACgtaatgtcattttcgttgttgacattatggtttatcatgttttcagattcgatttgattttgtttcttatcatagatattgtttatgttctcag
|| |||||||| || ||||||||| |||| ||||| ||||||| | | ||||| |||||||||||||| ||| | || || |||||||| ||||||||||| | ||  || | ||| |   ||||| |   ||  |  |||    |||| | |    | |||||| ||  ||| | || | | |||   |||
GTTCGTGAGTTGGCCGAAAAGGAGCCTGAAAATGGCGTCTTCAGACTACTCCGAAGTGATGTTACTCGGTTCCTTACAACAATACTTATTGGCACAACgtattctc-cttgcattgatcttattattgaaaattttcctttttt-ttcggtgtagaat-gtttctcatgctag-tgttttgt-tgtatgcag

upper sequence: Vv19s0090g01820.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: AT3G13070.1 (Arabidopsis thaliana), 5'ss of exon 2
GTGCGTGAGTTAGCTGAAAAGGAGTCTGAGAATGGTGTCTTCAAAATGCTCCGCAGTGATGTTACTCGTTTCTTAACGACTATACTTATAGGCACAACgtaatgtcattttcgttgttgacattatggtttatcatgttttcagattcgat-ttgattttgtttcttatcatagatattgtttatgttctcag
||||||||||| ||||| || ||  | ||||||||||| |||| ||||||||| |||||||| ||  | ||||| |||||||||||||| || ||||||||||    ||||| | |   | || |      ||| | |||  ||  | | | |  || |||| ||||||| ||| | ||||   || ||| ||
GTGCGTGAGTTGGCTGAGAAAGAACCAGAGAATGGTGTATTCAGAATGCTCCGGAGTGATGTCACCAGATTCTTGACGACTATACTTATTGGAACAACgtaattgttttttcctag---atatga------atcgtctttagaggattgctataaatattgtctcttatcttaggtcttgtggttggtcttag

upper sequence: Vv19s0090g01820.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: AT1G55930.1 (Arabidopsis thaliana), 5'ss of exon 2
GTGCGTGAGTTAGCTGAAAAGGAGTCTGAGAATGGTGTCTTCAAAATGCTCCGCAGTGATGTTACTCGTTTCTTAACGACTATACTTATAGGCACAACgtaatg-tcattttcgttgttgacattatggtttatcatgttttcagattcgatttgattttgtttcttatcatagatattgtttatgttctcag
||||| ||||| |||||||| ||| |||| ||||| || ||||  ||||||||||||||||||||  | || || || || |||||||| || ||||||||||| |  |||   ||  | | | | | |||| |  |  | |  | ||  ||    |||||| ||||| | | | | ||     | |||| ||
GTGCGCGAGTTGGCTGAAAAAGAGCCTGAAAATGGCGTTTTCAGGATGCTCCGCAGTGATGTTACCAGATTTTTGACAACCATACTTATTGGAACAACgtaatggttttttctattagttagaatgttgttttttttaatgttcgcttgaatc--gttttgtctcttaactttgttctttggatttttcttag