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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AACTAAAAGAAGAGGTGGTCCAGGGGGTCTAAACAAAGTTTGCGGTGTTTCACCTGAACTTCAGACCATTGTTGGCCAGCCAGCGCTGCCAAGGACCGAGgttcagattcgtaaaagatatatccttaacgattgtttgccagttttatatcatttcctaatattattggcatctaatttccaatatgtttggttcag

Basic information

species Vitis vinifera
transcript Vv19s0090g01460.t01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv19s0090g01460.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: LOC_Os08g39310.1 (Oryza sativa), 5'ss of exon 2
AACTAAAAGAAGAGGTGGTCCAGGGGGTCTAAACAAAGTTTGCGGTGTTTCACCTGAACTTCAGACCATTGTTGGCCAGCCAGCGCTGCCAAGGACCGAGgttcagattcgtaaaagatatatccttaacgattgtttgccagttttatatcatttcctaatattattggcatctaatttccaatatgtttggttcag
|   || ||||||||||||||||| || ||||||||||| || |||||||| ||||| || ||  | ||||||||  | ||| |  || | || || ||||||    |||         |  ||  ||  ||   ||  |  || ||| |  ||| | | || | ||      || |  |    |   |    | |||
AGTAAAGAGAAGAGGTGGTCCAGGTGGGCTAAACAAAGTCTGTGGTGTTTCTCCTGAGCTGCAAGCTATTGTTGGTGAACCAACCATGGCTAGAACTGAGgtttg--ttctgctggctcacctctctagtga--attatcttgtatta-actattacatcatgt-atgaaaccctgacgtt--gtgactcaactgcag

upper sequence: Vv19s0090g01460.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GRMZM2G124502_T01 (Zea mays), 5'ss of exon 2
-AACTAAAAGAAGAGGTGGTCCAGGGGGTCTAAACAAAGTTTGCGGTGTTTCACCTGAACTTCAGACCATTGTTGGCCAGCCAGCGCTGCCAAGGACCGAGgt-tcagattc----gtaaaagatatatccttaa-cgattgtttgccagttttatatcatttcctaatattattgg---catctaatttccaatatgtttggttcag
 ||   ||| ||||||||| || || ||| |||| ||||||||||   ||||||||||||||||||||||||||||  || | ||  || |||| ||  ||||   | |||     || | ||| || | |  |  |  |  | | |  ||  | | | | |   | |   ||| |     |   |||    | ||   ||  |||||
TAAGCGAAA-AAGAGGTGGACCTGGTGGTTTAAATAAAGTTTGCGCAATTTCACCTGAACTTCAGACCATTGTTGGTGAGACTGCCATGTCAAGAACTCAGgtactaaatttcattgtgatagaaatttacacactctgtactcttctggtactctttgaatgattgactctatagagtctagaaaataaatattagtctttattcag

upper sequence: Vv19s0090g01460.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GRMZM2G035325_T01 (Zea mays), 5'ss of exon 2
-AACTAAAAGAAGAGGTGGTCCAGGGGGTCTAAACAAAGTTTGCGGTGTTTCACCTGAACTTCAGACCATTGTTGGCCAGCCAGCGCTGCCAAGGACCGAGgttcag----attcgtaaaagatatatccttaacgattgtttgccagttttatatcatttcctaatattattggcatctaatttccaatatgtttggttcag
 ||   ||| ||||||||| || || ||| |||| ||| |||| |   ||||||||||||||||||||||||||||  || | ||  || |||| ||| |||| |      |||  |  |  ||| |   | |   | | | | |     |  ||   |||   |  |||      |   ||||     ||   ||  |||||
TAAGCGAAA-AAGAGGTGGACCTGGTGGTTTAAATAAAATTTGTGCAATTTCACCTGAACTTCAGACCATTGTTGGTGAGACTGCTATGTCAAGAACCCAGgtactactcaatttctttacaatagaaattgacacactctatactctactggtactctttga-atgattgactctaggaaattaatgttagtcttcattcag

upper sequence: Vv19s0090g01460.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA08G43590.2 (Glycine max), 5'ss of exon 2
AACTAAAAGAAGAGGTGGTCCAGGGGGTCTAAACAAAGTTTGCGGTGTTTCACCTGAACTTCAGACCATTGTTGGCCAGCCAGCGCTGCCAAGGACCGAGgttcagattcgtaaaagatatatccttaacgattgtttgccagttttatatcatttcctaatattattggcatcta-atttccaatatgtttggtt-cag---------
    || ||||||||||| ||||| ||||| | |||| | || |||||||| ||||||||||||  ||||||||||||||||||  || | ||||| ||||||   |            ||||  || | | ||||| |   | || ||      |  | ||||  ||  || | | ||||| || ||||   ||  | |         
GGTGAAGAGAAGAGGTGGCCCAGGAGGTCTCACCAAAATCTGTGGTGTTTCGCCTGAACTTCAGGTCATTGTTGGCCAGCCAGCATTGTCGAGGACTGAGgtttgtaccg---------atatttttgaagcttgtt-gtttgcttaatgcataattttgatatagtttccagcgagatttctaaaatgtggagtaactgtggttttag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110399949|gb|EC966482.1|EC966482
EST:     CACCTGAACTTCAGGCCATTGTTGGCCAGCCAGCGCTGCCAAGGACCGAG                         ATTGTGAAACAGCTCTGGGCATACATAAGGAGAAACAATCTCCAAGATCCA
genomic: CACCTGAACTTCAGACCATTGTTGGCCAGCCAGCGCTGCCAAGGACCGAGgttcagattc ... tttggttcagATTGTGAAACAGCTCTGGGCATACATAAGGAGAAACAATCTCCAAGATCCA
EST: gi|110398549|gb|EC964989.1|EC964989
EST:     CATTGTTGGCCAGCCAGCGCTGCCAAGGACCGAG                         ATTGTGAAACAGCTCTGGGCATACATAAGGAGAAACAATCTCCAAGATCCA
genomic: CATTGTTGGCCAGCCAGCGCTGCCAAGGACCGAGgttcagattc ... tttggttcagATTGTGAAACAGCTCTGGGCATACATAAGGAGAAACAATCTCCAAGATCCA
EST: gi|110713078|gb|EE088682.1|EE088682
EST:     CACCTGAACTTCAGGTCATTGTTGGCCAGCCAGCGCTGCCAAGGACCGAG                         ATTGTGAAACAGCTCTGGGCATACATAAGGAGAAACAATCTCCAAGATCCA
genomic: CACCTGAACTTCAGACCATTGTTGGCCAGCCAGCGCTGCCAAGGACCGAGgttcagattc ... tttggttcagATTGTGAAACAGCTCTGGGCATACATAAGGAGAAACAATCTCCAAGATCCA