Sequence
atgc intronic sequence ATGC exonic sequenceTGGTTGTTGTTATCCAAATATTTATGGCAAGAGAACTATTCAATCTGCTAAGAAGAGCACATGAAGATAAGCATCTTCCAGGATTCAGGCTCTTGAATTGgtaacgactaagtctctacatgttctcttcaagtgactgatacatttagatgattgctttacatgttattccag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv19s0090g01220.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: LOC_Os10g17990.1 (Oryza sativa), 5'ss of exon 3
TGGTTGTTGTTATCCAAATATTTATGGCAAGAGAACTATTCAATCTGCTAAGAAGAGCACATGAAGATAAGCATCTTCCAGGATTCAGGCTCTTGAATTGgtaacgactaagtctctacatgttctcttcaagtgactgatacatttagatg--attgc---tttacatgttattccag----------
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TGGTTGTCGTTATCCAAATCTTTATGGCGAGTGAGCTCTTCAATCTGCTGAGGAAGGCCAACGAGGACAGGCAGCTTCCAGGGTTCAGACTACTTAACTGgtaaaaatggcatggtta-attctgactatgaacatttga-atgtttacatgccattacagattcttgttttcttcgtgacaattgcag
upper sequence: Vv19s0090g01220.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA14G02210.1 (Glycine max), 5'ss of exon 1
TGGTTGTTGTTATCCAAATATTTATGGCAAGAGAACTATTCAATCTGCTAAGAAGAGCACATGAAGATAAGCATCTTCCAGGATTCAGGCTCTTGAATTGgtaacgactaa---------gtctctacatgttc-tcttcaagtgactgatac---atttagatgat--tgctttaca----tgttattccag-------------
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TGGTTGTGGTTATCCAAATATTTATGGCCAGTGAGCTCTTCAATCTACTTAGAAGAGCATCTCAAGATAAACGTCTCCCTAAGTTTAAGCTCTTGAACTGgtaagcattcatgtactgtaatttccaaatgatcatgtgcaaatgagaaatgtttagtttaataaatagtgtttcacaaagatatgattctgaatgcaatgtccag
upper sequence: Vv19s0090g01220.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA02G46440.1 (Glycine max), 5'ss of exon 3
TGGTTGTTGTTATCCAAATATTTATGGCAAGAGAACTATTCAATCTGCTAAGAAGAGCACATGAAGATAAGCATCTTCCAGGATTCAGGCTCTTGAATTGgtaacgactaagtctctacatgttctcttcaagtgactg-atacatttagatgattgctt--tacatgttattccag-----------------------------
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TGGTTGTGGTTATCCAAATATTTATGGCCAGTGAGCTCTTCAATCTACTTAGAAGAGCAACTCAAGATAAACGTCTCCCTAAGTTTAAGTTTTTGAACTGgtaagtattca--tgctac-tgtaatttctaaatgatcatgtgcatat-gagaagtgtttaatacatagtgtttcacaaagatatgattctaaatgcaatgtccagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110424073|gb|EC990426.1|EC990426EST: AGAAGAGCACATGAAGATAAGCATCTTCCAGGATTCAGGCTCTTGAATTG GCATTTTTTCTTCACAGCAATGCTGTTCGTATATGGCCGTATTCTCAGTCA
genomic: AGAAGAGCACATGAAGATAAGCATCTTCCAGGATTCAGGCTCTTGAATTGgtaacgacta ... gttattccagGCATTTTTTCTTCACAGCAATGCTGTTCGTATATGGCCGTATTCTCAGTCA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGGTTGTTGTTATCCAAATATTTATGGCAAGAGAACTATTCAATCTGCTAAGAAGAGCACATGAAGATAAGCATCTTCCAGGATTCAGGCTCTTGAATTGgtaacgactaagtctctacatgttctcttcaagtgactgatacatttagatgattgctttacatgttattccag
- - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA