1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
AATGTGGACAATGCCTGAAGCTAAGGGTATATCAAGGACAACAAGGACTGAAGATGAAGAGCTGAAGTTGGTTTCAGAAGGTTGTGCGCCAACTACTgtgagtatcagtgtccaagttcctgggacattttatggggatatcactgataatgacataataggcaaatatatgatattttaggtataatgatgctttgttgttacttatttaatttttgtgctcttgcttttgatttcag
species | Vitis vinifera |
transcript | Vv19s0090g00560.t01 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CTGAGGATGAAGAACTGAAGTTGGTTTCAGAAGGTTGTGCGCCAACTACT AAGGATGTAAAGCATAAATCCAAGGACATTCTAGGGGAAGTTTCAAGGACTEST: gi|110688432|gb|EE066976.1|EE066976
genomic: CTGAAGATGAAGAGCTGAAGTTGGTTTCAGAAGGTTGTGCGCCAACTACTgtgagtatca ... ttgatttcagAAGGATGTAAAGCATAAATCCAAGGACATTCTAGGGGAAGTTTCAAGGACT
EST: CTGAAGATGAAGAGCTGAAGTTGGTTTCAGAAGGTTGTGCGCCAACTACT AAGGATGTAAAGCATAAATCCAAGGACATTCTAGGGGAAGTTTCAAGGACTEST: gi|161715741|gb|FC066145.1|FC066145
genomic: CTGAAGATGAAGAGCTGAAGTTGGTTTCAGAAGGTTGTGCGCCAACTACTgtgagtatca ... ttgatttcagAAGGATGTAAAGCATAAATCCAAGGACATTCTAGGGGAAGTTTCAAGGACT
EST: CTGAAGATGAAGAGCTGAAGTTGGTTTCAGAAGGTTGTGCGCCAACTACT AAGGATGTAAAGCATAAATCCAAGGACATTCTAGGGGAAGTTTCAAGGACTEST: gi|37184436|gb|CF603790.1|CF603790
genomic: CTGAAGATGAAGAGCTGAAGTTGGTTTCAGAAGGTTGTGCGCCAACTACTgtgagtatca ... ttgatttcagAAGGATGTAAAGCATAAATCCAAGGACATTCTAGGGGAAGTTTCAAGGACT
EST: CTGAAGATGAAGAGCTGAAGTTGGTTTCAGAAGGTTGTGCGCCAACTACT AAGGATGTAAAGCATAAATCCAAGGACATTCTAGGGGAAGTTTCAAGGACT
genomic: CTGAAGATGAAGAGCTGAAGTTGGTTTCAGAAGGTTGTGCGCCAACTACTgtgagtatca ... ttgatttcagAAGGATGTAAAGCATAAATCCAAGGACATTCTAGGGGAAGTTTCAAGGACT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AATGTGGACAATGCCTGAAGCTAAGGGTATATCAAGGACAACAAGGACTGAAGATGAAGAGCTGAAGTTGGTTTCAGAAGGTTGTGCGCCAACTACTgtgagtatcagtgtccaagttcctgggacattttatggggatatcactgataatgacataataggcaaatatatgatattttaggtataatgatgctttgttgttacttatttaatttttgtgctcttgcttttgatttcag
- - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG