1 5' 3' | 2 5' 3' | 3 5' 3' |
AGCGGCGGCGGCTCAGAAACAGAAAACTTTGTTGCAGAGAGTTGAAACTGACATCGCTAATGTGGTTGATCACTTCACTTTCTTAGTTAACGTTGCTCGGgtaccattactttgttctttttaaattctcttccttttcttttttttttaatttcattttcttcatgattttatctattggcagaaacttgttggtaaaa...
species | Vitis vinifera |
transcript | Vv19s0085g01120.t01 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: ACATCGCTAATGTGGTTGATCACTTCACTTTCTTAGTTAACGTTGCTCGG GTGAATGACCCGCCAGTCAGAAATTCACAGGAGGCTTTCATGATGGAGATGEST: gi|32458309|gb|CD799483.1|CD799483
genomic: ACATCGCTAATGTGGTTGATCACTTCACTTTCTTAGTTAACGTTGCTCGGgtaccattac ... tttgttgtagGTGAATGACCCGCCAGTCAGAAATTCACAGGAGGCTTTCATGATGGAGATG
EST: ATCGCTAATGTGTGGTTGATCACTTCACTTTCTTAGTTAACGTTGCTCGG GTGAATGACCCGCCAGTCAGAAATTCACAGGAGGCTTTCATGATGGAGATGEST: gi|110356846|gb|EC919965.1|EC919965
genomic: ATCGCTAA--TGTGGTTGATCACTTCACTTTCTTAGTTAACGTTGCTCGGgtaccattac ... tttgttgtagGTGAATGACCCGCCAGTCAGAAATTCACAGGAGGCTTTCATGATGGAGATG
EST: ACATCGCTAATGTGGTTGATCACTTCACTTTCTTAGTTAACGTTGCTCGG GTGAATGACCCGCCAGTCAGAAATTCACAGGAGGCTTTCATGATGGAGATGEST: gi|110381743|gb|EC935270.1|EC935270
genomic: ACATCGCTAATGTGGTTGATCACTTCACTTTCTTAGTTAACGTTGCTCGGgtaccattac ... tttgttgtagGTGAATGACCCGCCAGTCAGAAATTCACAGGAGGCTTTCATGATGGAGATG
EST: ACATCGCTAATGTGGTTGATCACTTCACTTTCTTAGTTAACGTTGCTCGG GTGAATGACCCGCCAGTCAGAAATTCACAGGAGGCTTTCATGATGGAGATGEST: gi|110412180|gb|EC977920.1|EC977920
genomic: ACATCGCTAATGTGGTTGATCACTTCACTTTCTTAGTTAACGTTGCTCGGgtaccattac ... tttgttgtagGTGAATGACCCGCCAGTCAGAAATTCACAGGAGGCTTTCATGATGGAGATG
EST: ACATCGCTAATGTGGTTGATCACTTCACTTTCTTAGTTAACGTTGCTCGG GTGAATGACCCGCCAGTCAGAAATTCACAGGAGGCTTTCATGATGGAGATGEST: gi|110390375|gb|EC955280.1|EC955280
genomic: ACATCGCTAATGTGGTTGATCACTTCACTTTCTTAGTTAACGTTGCTCGGgtaccattac ... tttgttgtagGTGAATGACCCGCCAGTCAGAAATTCACAGGAGGCTTTCATGATGGAGATG
EST: ACATCGCTAATGTGGTTGATCACTTCACTTTCTTAGTTAACGTTGCTCGG GTGAATGACCCGCCAGTCAGAAATTCACAGGAGGCTTTCATGATGGAGATGEST: gi|110358467|gb|EC922701.1|EC922701
genomic: ACATCGCTAATGTGGTTGATCACTTCACTTTCTTAGTTAACGTTGCTCGGgtaccattac ... tttgttgtagGTGAATGACCCGCCAGTCAGAAATTCACAGGAGGCTTTCATGATGGAGATG
EST: ACATCGCTAATGTGGTTGATCACTTCACTTTCTTAGTTAACGTTGCTCGG GTGAATGACCCGCCAGTCAGAAATTCACAGGAGGCTTTCATGATGGAGATG
genomic: ACATCGCTAATGTGGTTGATCACTTCACTTTCTTAGTTAACGTTGCTCGGgtaccattac ... tttgttgtagGTGAATGACCCGCCAGTCAGAAATTCACAGGAGGCTTTCATGATGGAGATG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGCGGCGGCGGCTCAGAAACAGAAAACTTTGTTGCAGAGAGTTGAAACTGACATCGCTAATGTGGTTGATCACTTCACTTTCTTAGTTAACGTTGCTCGGgtaccattactttgttctttttaaattctcttccttttcttttttttttaatttcattttcttcatgattttatctattggcagaaacttgttggtaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctcttcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcagaaa