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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGCCACCCCGAAGACCATCATGAGAGTCATGGGTGTAAAAGGTCTCACTCTTTACCATCTCAAGAGCCATCTCCAGgtttgaacacaacagaggataacaaatattgcgtgcttcttttgcttttgatgcatctgatattgagttggcttgatattttctcttttccttttccttttccttccttttctttgttcatag

Basic information

species Vitis vinifera
transcript Vv19s0085g00890.t01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv19s0085g00890.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: PP1S25_131V6.1 (Physcomitrella patens), 5'ss of exon 2
AGGCCACCCCGAAGACCATCATGAGAGTCATGGGTGTAAAAGGTCTCACTCTTTACCATCTCAAGAGCCATCTCCAGgt---ttgaacaca---acagaggataacaaatattgcgtgcttcttttgcttttgatgcatctgatattgagttggcttgatattttctcttttccttttccttttccttccttttctttgttcatag---------
|||| || |||||  |  | |||||||||||||| || || ||||| |||||||||||| | ||||||||||| |||||    ||  | ||   || | | ||  ||      |     |  |  |  |     | | |||  | ||  | |  | |  | ||   ||| |  | ||   |        | ||  |||   | |||         
AGGCTACACCGAAATCTGTAATGAGAGTCATGGGAGTGAAGGGTCTTACTCTTTACCATTTGAAGAGCCATCTTCAGgtaggctgctcgcacttactgcgcatttcatcagcagtaaattattaatattacgttttcctcttctctttcgatcacattgtgttcattctatggcattcgttaaagtaaacattaatttcgacttagggcttgcag

upper sequence: Vv19s0085g00890.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: PP1S47_90V6.1 (Physcomitrella patens), 5'ss of exon 3
AGGCCACCCCGAAGACCATCATGAGAGTCATGGGTGTAAAAGGTCTCACTCTTTACCATCTCAAGAGCCATCTCCAGgtttgaacacaacagaggataacaaatattgcgtgcttcttttgcttttgatgcatctgatattgagttggcttgatattttctcttttccttttccttttccttccttttctttgttcatag
|||| ||||| ||  |  ||||| | || |||||||| ||||||||||||||||| ||| | || ||||||||||||||               |||  |     ||     ||  |||   ||||| |  || |  | ||  ||| | ||| |  | | | ||| || |||   ||||||| |    | |   || |  
AGGCAACCCCAAAATCTGTCATGCGGGTGATGGGTGTCAAAGGTCTCACTCTTTATCATTTAAAAAGCCATCTCCAGgt-------------gagattgctgtctttat---ctcttttctattttgttttattt--tgttttgtttgtttgtttgtgtttttttccccttt---tttcctttcacaacctccctcgt--