Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGCGCCCAAAGGGTGTTACACCTAAGTACAGCTTGAAACCTCTTGTGCCAAGGCTGTCTGAACTTCTTGGAGTTGAGgtttgtttattccctaatatttctgttgttttgttattcaaacctgatttggctggcatgaatgtactcacttggatgacttttttgtttgcctttactag

Basic information

species Vitis vinifera
transcript Vv19s0085g00370.t01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv19s0085g00370.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: LOC_Os06g45710.1 (Oryza sativa), 5'ss of exon 3
GGGCGCCCAAAGGGTGTTACACCTAAGTACAGCTTGAAACCTCTTGTGCCAAGGCTGTCTGAACTTCTTGGAGTTGAGgtttgttt----attccctaatatttctgttgttttgttattcaaacctgatttggctggcatgaatgtact-cacttggatgacttttttgtttgcctttactag
|| |||||||| ||||| || || |||||||||||||| |||||||| ||  |  ||||||| |||||||| ||||| || || |     |      |  || | | || || ||  ||||             |||| | ||   |  |  | ||  |||  ||  |  | | | | |  |||
GGTCGCCCAAAAGGTGTAACCCCGAAGTACAGCTTGAAGCCTCTTGTTCCGCGCTTGTCTGAGCTTCTTGGTGTTGATgtatgctataaaaggataaatcatatttattattctgcaattctgcttactacaaactggta-gaccatcttatatttccatgttttgatgatgtccttgtcgtag

upper sequence: Vv19s0085g00370.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: LOC_Os02g07260.1 (Oryza sativa), 5'ss of exon 3
GGGCGCCCAAAGGGTGTTACACCTAAGTACAGCTTGAAACCTCTTGTGCCAAGGCTGTCTGAACTTCTTGGAGTTGAGgtttgtttattccctaatatttctgttgttttgttattcaaacctgatttggctggcatgaatgtactcacttggatgacttttttgtttgcctttactag
|| || || |||||||| || || |||||||||||||| |||||||| ||| |  ||||||| || |||||||| || || ||   |||   | |||  | |      ||  | ||      || |      | ||  |        | |    |||  | ||||| ||| |  | |||
GGCCGTCCGAAGGGTGTCACCCCCAAGTACAGCTTGAAGCCTCTTGTTCCACGCTTGTCTGAGCTACTTGGAGTCGATgtatgcc-attggatgatagctgttaacagttaatttttgttattgttgaactagacaacagctcttgtattcctctgatctatttgtgtgcataaa-tag

upper sequence: Vv19s0085g00370.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GRMZM2G382914_T02 (Zea mays), 5'ss of exon 3
GGGCGCCCAAAGGGTGTTACACCTAAGTACAGCTTGAAACCTCTTGTGCCAAGGCTGTCTGAACTTCTTGGAGTTGAGgtttgtttattccctaatatttctgttgttttgttattcaaacctgatttggctggcatgaatgtactcacttggatgacttttttgtttgcctttactag
|| || ||||| ||||| || || |||||||||||||| |||||||| ||| |  ||||||| || ||||||||||| || || | |     | | |||    |  ||| ||   |   | ||  ||  | |    | | ||  || |  ||  ||  |   | |              
GGTCGTCCAAAAGGTGTCACCCCAAAGTACAGCTTGAAGCCTCTTGTTCCACGCTTGTCTGAGCTCCTTGGAGTTGAAgtatgctaagatt-tgacattagcttattttagtacctgctatct--ttcagttattctaagtg--ctaatatgtgtgcataaatag--------------

upper sequence: Vv19s0085g00370.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA15G41550.1 (Glycine max), 5'ss of exon 3
GGGCGCCCAAAGGGTGTTACACCTAAGTACAGCTTGAAACCTCTTGTGCCAAGGCTGTCTGAACTTCTTGGAGTTGAGgtttgtttatt----ccctaatatttctgttgttttgttattcaaacctgatttggctggcatgaatg-tactcacttggatgacttttttgtttgcctttactag---
|| || ||||| ||||| |||||||| ||||| ||||| ||||||||||||||||||||| ||||||||||| ||||||| ||  |  |      ||    ||| | ||||||||  ||||   ||         | |  ||  || |  ||   |   | ||| | |  ||| |  ||  |     
GGACGTCCAAAAGGTGTAACACCTAAATACAGTTTGAAGCCTCTTGTGCCAAGGCTGTCTCAACTTCTTGGAATTGAGgtgtgccttctaagctgctccattttgttttgttttggcattccttccacccccttttcgtttgcttgattttctgcttattcactgtgtcattttctcttgattacag

upper sequence: Vv19s0085g00370.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA08G17600.1 (Glycine max), 5'ss of exon 3
GGGCGCCCAAAGGGTGTTACACCTAAGTACAGCTTGAAACCTCTTGTGCCAAGGCTGTCTGAACTTCTTGGAGTTGAGgtttgt-ttattccctaatatttctg---ttgttttgttatt-caaacctgat---ttggctggcatgaatgtactcacttggatgacttttttgtttgcctttactag--
|| || || || ||||| |||||||| ||||| ||||| ||||||||||||||||||||| ||||||| ||| ||||||| ||  ||||   ||  | | | ||   |||||||||| |  ||  |||||    |    |   ||   || | | |||       | || |  ||| |  ||  ||   
GGACGTCCTAAAGGTGTAACACCTAAATACAGTTTGAAGCCTCTTGTGCCAAGGCTGTCTCAACTTCTCGGAATTGAGgtgtgccttataaacttctctatttggttttgttttgttttggcattcctgacacctccttttttattgctggatttactctttattcattgtcattttctcttgatatag

upper sequence: Vv19s0085g00370.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: AT1G79550.1 (Arabidopsis thaliana), 5'ss of exon 2
GGGCGCCCAAAGGGTGTTACACCTAAGTACAGCTTGAAACCTCTTGTGCCAAGGCTGTCTGAACTTCTTGGAGTTGAGgtttgtttattccctaatatttctgttgttttgttattcaaacctgatttggctggcatgaatgtactcacttggatgacttttttgtttgcctttactag
|| |||||||| |||||||| |||||||||||||| || ||||||||||| ||  |||||||||||||||| |||||||||||||  |   |   |  |    |||    |||  | ||   |   ||       |  | ||| ||||||  | |    ||  |               
GGCCGCCCAAAAGGTGTTACTCCTAAGTACAGCTTAAAGCCTCTTGTGCCCAGATTGTCTGAACTTCTTGGTGTTGAGgtttgttcctcttcctcttctagacttgcaaggtttctgaacattagcttttaaaagaacactgttctcactctgtttgtgttaatag-------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|87586006|gb|DY474492.1|DY474492
EST:     ACAGCTTGAAACCTCTTGTGCCAAGGCTGTCTGAACTTCTTGGAGTTGAG                         GTTAAAATGGCAAATGATTGTATTGGTGAGGAAGTCAAGATATTGGTGGCT
genomic: ACAGCTTGAAACCTCTTGTGCCAAGGCTGTCTGAACTTCTTGGAGTTGAGgtttgtttat ... cctttactagGTTAAAATGGCAAATGATTGTATTGGTGAGGAAGTCAAGATATTGGTGGCT
EST: gi|110699307|gb|EE076201.1|EE076201
EST:     ACAGCTTGAAACCTCTTGTGCCAAGGCTGTCTGAACTTCTTGGAGTTGAG                         GTTAAAATGGCAAATGATTGTATTGGTGAGGAAGTCAAGATATTGGTGGCT
genomic: ACAGCTTGAAACCTCTTGTGCCAAGGCTGTCTGAACTTCTTGGAGTTGAGgtttgtttat ... cctttactagGTTAAAATGGCAAATGATTGTATTGGTGAGGAAGTCAAGATATTGGTGGCT
EST: gi|110397873|gb|EC963830.1|EC963830
EST:     ACAGCTTGAAACCTCTTGTGCCAAGGCTGTCTGAACTTCTTGGAGTTGAG                         GTTAAAATGGCAAATGATTGTATTGGTGAGGAAGTCAAGATATTGGTGGCT
genomic: ACAGCTTGAAACCTCTTGTGCCAAGGCTGTCTGAACTTCTTGGAGTTGAGgtttgtttat ... cctttactagGTTAAAATGGCAAATGATTGTATTGGTGAGGAAGTCAAGATATTGGTGGCT
EST: gi|71858257|gb|DT007312.1|DT007312
EST:     AAACCTCTTGTGCCAAGGCTGTCTGAACTTCTTGGAGTTGAG                         GTTAAAATGGCAAATGATTGTATTGGTGAGGAAGTCAAGATATTGGTGGCT
genomic: AAACCTCTTGTGCCAAGGCTGTCTGAACTTCTTGGAGTTGAGgtttgtttat ... cctttactagGTTAAAATGGCAAATGATTGTATTGGTGAGGAAGTCAAGATATTGGTGGCT
EST: gi|30304283|gb|CB981077.1|CB981077
EST:     ACAGCTTGAAACCTCTTGTGCCAAGGCTGTCTGAACTTCTTGGAGTTGAG                         GTTAAAATGGCAAATGATTGTATTGGTGAGGAAGTCAAGATATTGGTGGCT
genomic: ACAGCTTGAAACCTCTTGTGCCAAGGCTGTCTGAACTTCTTGGAGTTGAGgtttgtttat ... cctttactagGTTAAAATGGCAAATGATTGTATTGGTGAGGAAGTCAAGATATTGGTGGCT
EST: gi|161715115|gb|FC062745.1|FC062745
EST:     ACAGCTTGAAACCTCTTGTGCCAAGGCTGTCTGAACTTCTTGGAGTTGAG                         GTTAAAATGGCAAATGATTGTATTGGTGAGGAAGTCAAGATATTGGTGGCT
genomic: ACAGCTTGAAACCTCTTGTGCCAAGGCTGTCTGAACTTCTTGGAGTTGAGgtttgtttat ... cctttactagGTTAAAATGGCAAATGATTGTATTGGTGAGGAAGTCAAGATATTGGTGGCT
EST: gi|161711155|gb|FC061161.1|FC061161
EST:     ACAGCTTGAAACCTCTTGTGCCAAGGCTGTCTGAACTTCTTGGAGTTGAG                         GTTAAAATGGCAAATGATTGTATTGGTGAGGAAGTCAAGATATTGGTGGCT
genomic: ACAGCTTGAAACCTCTTGTGCCAAGGCTGTCTGAACTTCTTGGAGTTGAGgtttgtttat ... cctttactagGTTAAAATGGCAAATGATTGTATTGGTGAGGAAGTCAAGATATTGGTGGCT
EST: gi|110720497|gb|EE096481.1|EE096481
EST:     ACAGCTTGAAACCTCTTGTGCCAAGGCTGTCTGAACTTCTTGGAGTTGAG                         GTTAAAATGGCAAATGATTGTATTGGTGAGGAAGTCAAGATATTGGTGGCT
genomic: ACAGCTTGAAACCTCTTGTGCCAAGGCTGTCTGAACTTCTTGGAGTTGAGgtttgtttat ... cctttactagGTTAAAATGGCAAATGATTGTATTGGTGAGGAAGTCAAGATATTGGTGGCT
EST: gi|110686232|gb|EE063649.1|EE063649
EST:     ACAGCTTGAAACCTCTTGTGCCAAGGCTGTCTGAACTTCTTGGAGTTGAG                         GTTAAAATGGCAAATGATTGTATTGGTGAGGAAGTCAAGATATTGGTGGCT
genomic: ACAGCTTGAAACCTCTTGTGCCAAGGCTGTCTGAACTTCTTGGAGTTGAGgtttgtttat ... cctttactagGTTAAAATGGCAAATGATTGTATTGGTGAGGAAGTCAAGATATTGGTGGCT
EST: gi|110724013|gb|EE099467.1|EE099467
EST:     ACAGCTTGAAACCTCTTGTGCCAAGGCTGTCTGAACTTCTTGGAGTTGAG                         GTTAAAATGGCAAATGATTGTATTGGTGAGGAAGTCAAGATATTGGTGGCT
genomic: ACAGCTTGAAACCTCTTGTGCCAAGGCTGTCTGAACTTCTTGGAGTTGAGgtttgtttat ... cctttactagGTTAAAATGGCAAATGATTGTATTGGTGAGGAAGTCAAGATATTGGTGGCT
EST: gi|30301262|gb|CB978056.1|CB978056
EST:     ACAGCTTGAAACCTCTTGTGCCAAGGCTGTCTGAACTTCTTGGAGTTGAG                         GTTAAAATGGCAAATGATTGTATTGGTGAGGAAGTCAAGATATTGGTGGCT
genomic: ACAGCTTGAAACCTCTTGTGCCAAGGCTGTCTGAACTTCTTGGAGTTGAGgtttgtttat ... cctttactagGTTAAAATGGCAAATGATTGTATTGGTGAGGAAGTCAAGATATTGGTGGCT
EST: gi|161719810|gb|FC066106.1|FC066106
EST:     ACAGCTTGAAACCTCTTGTGCCAAGGCTGTCTGAACTTCTTGGAGTTGAG                         GTTAAAATGGCAAATGATTGTATTGGTGAGGAAGTCAAGATATTGGTGGCT
genomic: ACAGCTTGAAACCTCTTGTGCCAAGGCTGTCTGAACTTCTTGGAGTTGAGgtttgtttat ... cctttactagGTTAAAATGGCAAATGATTGTATTGGTGAGGAAGTCAAGATATTGGTGGCT
EST: gi|71870341|gb|DT019396.1|DT019396
EST:     ATAGCTTGAAACCTCTTGTGCCAAGGCTGTCTGAACTTCTTGGAGTTGAG                         GTTAAAATGGCAAATGATTGTATTGGTGAGGAAGTCAAGATATTGGTGGCT
genomic: ACAGCTTGAAACCTCTTGTGCCAAGGCTGTCTGAACTTCTTGGAGTTGAGgtttgtttat ... cctttactagGTTAAAATGGCAAATGATTGTATTGGTGAGGAAGTCAAGATATTGGTGGCT
EST: gi|110708833|gb|EE086826.1|EE086826
EST:     ACAGCTTGAAACCTCTTGTGCCAAGGCTGTCTGAACTTCTTGGAGTTGAG                         GTTAAAATGGCAAATGATTGTATTGGTGAGGAAGTCAAGATATTGGTGGCT
genomic: ACAGCTTGAAACCTCTTGTGCCAAGGCTGTCTGAACTTCTTGGAGTTGAGgtttgtttat ... cctttactagGTTAAAATGGCAAATGATTGTATTGGTGAGGAAGTCAAGATATTGGTGGCT
EST: gi|161712835|gb|FC062358.1|FC062358
EST:     ACAGCTTGAAACCTCTTGTGCCAAGGCTGTCTGAACTTCTTGGAGTTGAG                         GTTAAAATGGCAAATGATTGTATTGGTGAGGAAGTCAAGATATTGGTGGCT
genomic: ACAGCTTGAAACCTCTTGTGCCAAGGCTGTCTGAACTTCTTGGAGTTGAGgtttgtttat ... cctttactagGTTAAAATGGCAAATGATTGTATTGGTGAGGAAGTCAAGATATTGGTGGCT
EST: gi|71864715|gb|DT013770.1|DT013770
EST:     ACAGCTTGAAACCTCTTGTGCCAAGGCTGTCTGAACTTCTTGGAGTTGAG                         GTTAAAATGGCAAATGATTGTATTGGTGAGGAAGTCAAGATATTGGTGGCT
genomic: ACAGCTTGAAACCTCTTGTGCCAAGGCTGTCTGAACTTCTTGGAGTTGAGgtttgtttat ... cctttactagGTTAAAATGGCAAATGATTGTATTGGTGAGGAAGTCAAGATATTGGTGGCT
EST: gi|110691483|gb|EE069633.1|EE069633
EST:     ACAGCTTGAAACCTCTTGTGCCAAGGCTGTCTGAACTTCTTGGAGTTGAG                         GTTAAAATGGCAAATGATTGTATTGGTGAGGAAGTCAAGATATTGGTGGCT
genomic: ACAGCTTGAAACCTCTTGTGCCAAGGCTGTCTGAACTTCTTGGAGTTGAGgtttgtttat ... cctttactagGTTAAAATGGCAAATGATTGTATTGGTGAGGAAGTCAAGATATTGGTGGCT
EST: gi|110685462|gb|EE062201.1|EE062201
EST:     ACAGCTTGAAACCTCTTGTGCCAAGGCTGTCTGAACTTCTTGGAGTTGAG                         GTTAAAATGGCAAATGATTGTATTGGTGAGGAAGTCAAGATATTGGTGGCT
genomic: ACAGCTTGAAACCTCTTGTGCCAAGGCTGTCTGAACTTCTTGGAGTTGAGgtttgtttat ... cctttactagGTTAAAATGGCAAATGATTGTATTGGTGAGGAAGTCAAGATATTGGTGGCT
EST: gi|110733067|gb|EE108902.1|EE108902
EST:     ACAGCTTGAAACCTCTTGTGCCAAGGCTGTCTGAACTTCTTGGAGTTGAG                         GTTAAAATGGCAAATGATTGTATTGGTGAGGAAGTCAAGATATTGGTGGCT
genomic: ACAGCTTGAAACCTCTTGTGCCAAGGCTGTCTGAACTTCTTGGAGTTGAGgtttgtttat ... cctttactagGTTAAAATGGCAAATGATTGTATTGGTGAGGAAGTCAAGATATTGGTGGCT
EST: gi|110701769|gb|EE079717.1|EE079717
EST:     ACAGCTTGAAACCTCTTGTGCCAAGGCTAT--GAACTTCTTGGAGTTGAG                         GTTAAAATGGCAAATGATTGTATTGGTGAGGAAGTCAAGATATTGGTGGCT
genomic: ACAGCTTGAAACCTCTTGTGCCAAGGCTGTCTGAACTTCTTGGAGTTGAGgtttgtttat ... cctttactagGTTAAAATGGCAAATGATTGTATTGGTGAGGAAGTCAAGATATTGGTGGCT
EST: gi|161717730|gb|FC064716.1|FC064716
EST:     ACAGCTTGAAACCTCTTGTGCCAAGGCTGTCTGAACTTCTTGGAGTTGAG                         GTTAAAATGGCAAATGATTGTATTGGTGAGGAAGTCAAGATATTGGTGGCT
genomic: ACAGCTTGAAACCTCTTGTGCCAAGGCTGTCTGAACTTCTTGGAGTTGAGgtttgtttat ... cctttactagGTTAAAATGGCAAATGATTGTATTGGTGAGGAAGTCAAGATATTGGTGGCT
EST: gi|30304082|gb|CB980876.1|CB980876
EST:     ACAGCTTGAAACCTCTTGTGCCAAGGCTGTCTGAACTTCTTGGAGTTGAG                         GTTAAAATGGCAAATGATTGTATTGGTGAGGAAGTCAAGATATTGGTGGCT
genomic: ACAGCTTGAAACCTCTTGTGCCAAGGCTGTCTGAACTTCTTGGAGTTGAGgtttgtttat ... cctttactagGTTAAAATGGCAAATGATTGTATTGGTGAGGAAGTCAAGATATTGGTGGCT
EST: gi|110703074|gb|EE079602.1|EE079602
EST:     ACAGCTTGAAACCTCTTGTGCCAAGGCTGTCTGAACTTCTTGGAGTTGAG                         GTTAAAATGGCAAATGATTGTATTGGTGAGGAAGTCAAGATATTGGTGGCT
genomic: ACAGCTTGAAACCTCTTGTGCCAAGGCTGTCTGAACTTCTTGGAGTTGAGgtttgtttat ... cctttactagGTTAAAATGGCAAATGATTGTATTGGTGAGGAAGTCAAGATATTGGTGGCT
EST: gi|161707911|gb|FC056957.1|FC056957
EST:     ACAGCTTGAAACCTCTTGTGCCAAGGCTGTCTGAACTTCTTGGAGTTGAG                         GTTAAAATGGCAAATGATTGTATTGGTGAGGAAGTCAAGATATTGGTGGCT
genomic: ACAGCTTGAAACCTCTTGTGCCAAGGCTGTCTGAACTTCTTGGAGTTGAGgtttgtttat ... cctttactagGTTAAAATGGCAAATGATTGTATTGGTGAGGAAGTCAAGATATTGGTGGCT
EST: gi|77585841|gb|DV222021.1|DV222021
EST:     ACAGCTTGAAACCTCTTGTGCCAAGGCTGTCTGAACTTCTTGGAGTTGAG                         GTTAAAATGGCAAATGATTGTATTGGTGAGGAAGTCAAGATATTGGTGGCT
genomic: ACAGCTTGAAACCTCTTGTGCCAAGGCTGTCTGAACTTCTTGGAGTTGAGgtttgtttat ... cctttactagGTTAAAATGGCAAATGATTGTATTGGTGAGGAAGTCAAGATATTGGTGGCT
EST: gi|71860708|gb|DT009763.1|DT009763
EST:     ACAGCTTGAAACCTCTTGTGCCAAGGCTGTCTGAACTTCTTGGAGTTGAG                         GTTAAAATGGCAAATGATTGTATTGGTGAGGAAGTCAAGATATTGGTGGCT
genomic: ACAGCTTGAAACCTCTTGTGCCAAGGCTGTCTGAACTTCTTGGAGTTGAGgtttgtttat ... cctttactagGTTAAAATGGCAAATGATTGTATTGGTGAGGAAGTCAAGATATTGGTGGCT
EST: gi|110703546|gb|EE080487.1|EE080487
EST:     ACAGCTTGAAACCTCTTGTGCCAAGGCTGTCTGAACTTCTTGGAGTTGAG                         GTTAAAATGGCAAATGATTGTATTGGTGAGGAAGTCAAGATATTGGTGGCT
genomic: ACAGCTTGAAACCTCTTGTGCCAAGGCTGTCTGAACTTCTTGGAGTTGAGgtttgtttat ... cctttactagGTTAAAATGGCAAATGATTGTATTGGTGAGGAAGTCAAGATATTGGTGGCT
EST: gi|110685734|gb|EE062711.1|EE062711
EST:     ACAGCTTGAAACCTCTTGTGCCAAGGCTGTCTGAACTTCTTGGAGTTGAG                         GTTAAAATGGCAAATGATTGTATTGGTGAGGAAGTCAAGATATTGGTGGCT
genomic: ACAGCTTGAAACCTCTTGTGCCAAGGCTGTCTGAACTTCTTGGAGTTGAGgtttgtttat ... cctttactagGTTAAAATGGCAAATGATTGTATTGGTGAGGAAGTCAAGATATTGGTGGCT
EST: gi|71872705|gb|DT021760.1|DT021760
EST:     ACAGCTTGAAACCTCTTGTGCCAAGGCTGTCTGAACTTCTTGGAGTTGAG                         GTTAAAATGGCAAATGATTGTATTGGTGAGGAAGTCAAGATATTGGTGGCT
genomic: ACAGCTTGAAACCTCTTGTGCCAAGGCTGTCTGAACTTCTTGGAGTTGAGgtttgtttat ... cctttactagGTTAAAATGGCAAATGATTGTATTGGTGAGGAAGTCAAGATATTGGTGGCT
EST: gi|110387417|gb|EC952080.1|EC952080
EST:     ACAGCTTGAAACCTCTTGTGCCAAGGCTGTCTGAACTTCTTGGAGTTGAG                         GTTAAAATGGCAAATGATTGTATTGGTGAGGAAGTCAAGATATTGGTGGCT
genomic: ACAGCTTGAAACCTCTTGTGCCAAGGCTGTCTGAACTTCTTGGAGTTGAGgtttgtttat ... cctttactagGTTAAAATGGCAAATGATTGTATTGGTGAGGAAGTCAAGATATTGGTGGCT
EST: gi|30304016|gb|CB980810.1|CB980810
EST:     ACAGCTTGAAACCTCTTGTGCCAAGGCTGTCTGAACTTCTTGGAGTTGAG                         GTTAAAATGGCAAATGATTGTATTGGTGAGGAAGTCAAGATATTGGTGGCT
genomic: ACAGCTTGAAACCTCTTGTGCCAAGGCTGTCTGAACTTCTTGGAGTTGAGgtttgtttat ... cctttactagGTTAAAATGGCAAATGATTGTATTGGTGAGGAAGTCAAGATATTGGTGGCT
EST: gi|71856048|gb|DT005103.1|DT005103
EST:     AAACCTCTTGTTCTAAGGCTGTCTGAACTTCTTGGAGTTGAG                         GTTAAAATGGCAAATGATTGTATTGGTGAGGAAGTCAAGATATTGGTGGCT
genomic: AAACCTCTTGTGCCAAGGCTGTCTGAACTTCTTGGAGTTGAGgtttgtttat ... cctttactagGTTAAAATGGCAAATGATTGTATTGGTGAGGAAGTCAAGATATTGGTGGCT
EST: gi|110685755|gb|EE062752.1|EE062752
EST:     ACAGCTTGAAACCTCTTGTGCCAAGGCTGTCTGAACTTCTTGGAGTTGAG                         GTTAAAATGGCAAATGATTGTATTGGTGAGGAAGTCAAGATATTGGTGGCT
genomic: ACAGCTTGAAACCTCTTGTGCCAAGGCTGTCTGAACTTCTTGGAGTTGAGgtttgtttat ... cctttactagGTTAAAATGGCAAATGATTGTATTGGTGAGGAAGTCAAGATATTGGTGGCT
EST: gi|161714658|gb|FC063893.1|FC063893
EST:     ACAGCTTGAAACCTCTTGTGCCAAGGCTGTCTGAACTTCTTGGAGTTGAG                         GTTAAAATGGCAAATGATTGTATTGGTGAGGAAGTCAAGATATTGGTGGCT
genomic: ACAGCTTGAAACCTCTTGTGCCAAGGCTGTCTGAACTTCTTGGAGTTGAGgtttgtttat ... cctttactagGTTAAAATGGCAAATGATTGTATTGGTGAGGAAGTCAAGATATTGGTGGCT
EST: gi|71874095|gb|DT023150.1|DT023150
EST:     ACAGCTTGAAACCTCTTGTGCCAAGGCTGTCTGAACTTCTTGGAGTTGAG                         GTTAAAATGGCAAATGATTGTATTGGTGAGGAAGTCAAGATATTGGTGGCT
genomic: ACAGCTTGAAACCTCTTGTGCCAAGGCTGTCTGAACTTCTTGGAGTTGAGgtttgtttat ... cctttactagGTTAAAATGGCAAATGATTGTATTGGTGAGGAAGTCAAGATATTGGTGGCT
EST: gi|110371427|gb|EC935445.1|EC935445
EST:     ACAGCTTGAAACCTCTTGTGCCAAGGCTGTCTGAACTTCTTGGAGTTGAG                         GTTAAAATGGCAAATGATTGTATTGGTGAGGAAGTCAAGATATTGGTGGCT
genomic: ACAGCTTGAAACCTCTTGTGCCAAGGCTGTCTGAACTTCTTGGAGTTGAGgtttgtttat ... cctttactagGTTAAAATGGCAAATGATTGTATTGGTGAGGAAGTCAAGATATTGGTGGCT
EST: gi|110359104|gb|EC920037.1|EC920037
EST:     ACAGCTTGAAACCTCTTGTGCCAAGGCTGTCTGAACTTCTTGGAGTTGAG                         GTTAAAATGGCAAATGATTGTATTGGTGAGGAAGTCAAGATATTGGTGGCT
genomic: ACAGCTTGAAACCTCTTGTGCCAAGGCTGTCTGAACTTCTTGGAGTTGAGgtttgtttat ... cctttactagGTTAAAATGGCAAATGATTGTATTGGTGAGGAAGTCAAGATATTGGTGGCT
EST: gi|71859896|gb|DT008951.1|DT008951
EST:     ACAGCTTGAAACCTCTTGTGCCAAGGCTGTCTGAACTTCTTGGAGTTGAG                         GTTAAAATGGCAAATGATTGTATTGGTGAGGAAGTCAAGATATTGGTGGCT
genomic: ACAGCTTGAAACCTCTTGTGCCAAGGCTGTCTGAACTTCTTGGAGTTGAGgtttgtttat ... cctttactagGTTAAAATGGCAAATGATTGTATTGGTGAGGAAGTCAAGATATTGGTGGCT
EST: gi|110699045|gb|EE077239.1|EE077239
EST:     ACAGCTTGAAACCTCTTGTGCCAAGGCTGTCTGAACTTCTTGGAGTTGAG                         GTTAAAATGGCAAATGATTGTATTGGTGAGGAAGTCAAGATATTGGTGGCT
genomic: ACAGCTTGAAACCTCTTGTGCCAAGGCTGTCTGAACTTCTTGGAGTTGAGgtttgtttat ... cctttactagGTTAAAATGGCAAATGATTGTATTGGTGAGGAAGTCAAGATATTGGTGGCT
EST: gi|110688519|gb|EE067167.1|EE067167
EST:     ACAGCTTGAAACCTCTTGTGCCAAGGCTGTCTGAACTTCTTGGAGTTGAG                         GTTAAAATGGCAAATGATTGTATTGGTGAGGAAGTCAAGATATTGGTGGCT
genomic: ACAGCTTGAAACCTCTTGTGCCAAGGCTGTCTGAACTTCTTGGAGTTGAGgtttgtttat ... cctttactagGTTAAAATGGCAAATGATTGTATTGGTGAGGAAGTCAAGATATTGGTGGCT
EST: gi|110709509|gb|EE085032.1|EE085032
EST:     ACAGCTTGAAACCTCTTGTGCCAAGGCTGTCTGAACTTCTTGGAGTTGAG                         GTTAAAATGGCAAATGATTGTATTGGTGAGGAAGTCAAGATATTGGTGGCT
genomic: ACAGCTTGAAACCTCTTGTGCCAAGGCTGTCTGAACTTCTTGGAGTTGAGgtttgtttat ... cctttactagGTTAAAATGGCAAATGATTGTATTGGTGAGGAAGTCAAGATATTGGTGGCT
EST: gi|30130997|gb|CB916336.1|CB916336
EST:     ACAGCTTGAAACCTCTTGTGCCAAGGCTGTCTGAACTTCTTGGAGTTGAG                         GTTAAAATGGCAAATGATTGTATTGGTGAGGAAGTCAAGATATTGGTGGCT
genomic: ACAGCTTGAAACCTCTTGTGCCAAGGCTGTCTGAACTTCTTGGAGTTGAGgtttgtttat ... cctttactagGTTAAAATGGCAAATGATTGTATTGGTGAGGAAGTCAAGATATTGGTGGCT
EST: gi|110372594|gb|EC936775.1|EC936775
EST:     ACAGCTTGAAACCTCTTGTGCCAAGGCTGTCTGAACTTCTTGGAGTTGAG                         GTTAAAATGGCAAATGATTGTATTGGTGAGGAAGTCAAGATATTGGTGGCT
genomic: ACAGCTTGAAACCTCTTGTGCCAAGGCTGTCTGAACTTCTTGGAGTTGAGgtttgtttat ... cctttactagGTTAAAATGGCAAATGATTGTATTGGTGAGGAAGTCAAGATATTGGTGGCT
EST: gi|33406655|gb|CF212282.1|CF212282
EST:     ACAGCTTGAAACCTCTTGTGCCAAGGCTGTCTGAACTTCTTGGAGTTGAG                         GTTAAAATGGCAAATGATTGTATTGGTGAGGAAGTCAAGATATTGGTGGCT
genomic: ACAGCTTGAAACCTCTTGTGCCAAGGCTGTCTGAACTTCTTGGAGTTGAGgtttgtttat ... cctttactagGTTAAAATGGCAAATGATTGTATTGGTGAGGAAGTCAAGATATTGGTGGCT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGGCGCCCAAAGGGTGTTACACCTAAGTACAGCTTGAAACCTCTTGTGCCAAGGCTGTCTGAACTTCTTGGAGTTGAGgtttgtttattccctaatatttctgttgttttgttattcaaacctgatttggctggcatgaatgtactcacttggatgacttttttgtttgcctttactag

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