Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGCAGAGCTGTTGAGGAGGGGACACACTCATTTCCTTGTGACTGGAGATGTTTATCATAGAGATTTCATTGATTCAACTCACTACCTGTTTTTCATCAGgtttcttatttctgattttatcaatgattgttttctattaacaagtttcttatgttttcttcagttcaataattttgcttcctgatcatgcag

Basic information

species Vitis vinifera
transcript Vv19s0027g01200.t01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv19s0027g01200.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: LOC_Os12g34860.1 (Oryza sativa), 5'ss of exon 3
AAGCAGAGCTGTTGAGGAGGGGACACACTCATTTCCTTGTGACTGGAGATGTTTATCATAGAGATTTCATTGATTCAACTCACTA-CCTGTTTTTCATCAGgtttcttatttctgattttatcaatgattgttttctattaacaagtttcttatgttt-tcttcagttcaataattttgcttcctgatcatgcag
 |||||||||| | |||   |||||||| ||||||||||| ||||| |||||||||| ||| ||||  ||||||||||||||||| |||   || ||||||||   |        || | |      ||   |||| |   | | |||| |  || |  | ||  || ||   |                     
-AGCAGAGCTGCTAAGGGATGGACACACACATTTCCTTGTAACTGGGGATGTTTATCGTAGGGATTCTATTGATTCAACTCACTATCCTTGCTTCCATCAGgtaaatgtaacgccatatcacttgaaata--tttccaaagaaaggtttgtgttgatgattttttgtacatgcag--------------------

upper sequence: Vv19s0027g01200.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: AC211349.4_FGT001 (Zea mays), 5'ss of exon 3
AAGCAGAGCTGTTGAGGAGGGGACACACTCATTTCCTTGTGACTGGAGATGTTTATCATAGAGATTTCATTGATTCAACTCACTA-CCTGTTTTTCATCAGgt---ttcttatttctgattttatcaatgattgttttctatta-acaagttt--cttatgttttcttcagttcaataattttgcttcctgatcatgcag-
 ||| |||||| | |||   ||||| || || || ||||| |||||||||||||| | ||| |||| |||||||||||||||||| ||||| || ||||||||   ||  | ||||    || |   | | |  |||||  ||| || | |    ||   | ||     || | |  | |    |    | |  || ||  
-AGCTGAGCTGCTAAGGCATGGACATACACACTTTCTTGTAACTGGAGATGTTTACCGTAGGGATTCCATTGATTCAACTCACTATCCTGTCTTCCATCAGgtaactttatttttccatgttcacttaaggtctttttcgtttacaccaatccagctctggattagcatagattagaattaaatccatgttacaatccatg

upper sequence: Vv19s0027g01200.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GRMZM2G078756_T01 (Zea mays), 5'ss of exon 3
AAGCAGAGCTGTTGAGGAGGGGACACACTCATTTCCTTGTGACTGGAGATGTTTATCATAGAGATTTCATTGATTCAACTCACTA-CCTGTTTTTCATCAGgtttcttatttctgattttatcaatgattgttttctattaacaagtttcttatgttttcttcagttca-ataattttgcttcctgatcatgcag
 ||| |||||| | |||   ||||  || || || ||||| |||||||||||||| | ||| |||| |||||||||||||||||| ||||| || ||||||||   ||  || ||   |  ||| | |   |||  || | |    | | ||  ||  |||| |   ||  ||                      
-AGCTGAGCTGCTAAGGGATGGACGTACACACTTTCTTGTAACTGGAGATGTTTACCGTAGGGATTCCATTGATTCAACTCACTATCCTGTCTTCCATCAGgtacttttgttttgccgtactcacttaaattttcttaatgaggtttgttttg-gtaatctttaacacatgtag---------------------

upper sequence: Vv19s0027g01200.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA18G52890.1 (Glycine max), 5'ss of exon 4
AAGCAGAGCTGTTGAGGAGGGGACACACTCATTTCCTTGTGACTGGAGATGTTTATCATAGAGATTTCATTGATTCAACTCACTA-CCTGTTTTTCATCAGgtttcttatttctgattttatcaatgattgttttctattaacaagtttcttatgttttcttcagttcaataattttgcttcctgatcatgcag
  |||||  | ||||| |  | | |||| ||||||||||| |||||||||||||| | ||| ||||  |||||||||||||| || ||||| || ||||| || |    |  |    |  |  ||    | |  |||| ||| ||     |||  |||   | | || |    ||||  ||  |          
-GGCAGAATTATTGAGAACTGAATACACCCATTTCCTTGTTACTGGAGATGTTTACCGTAGGGATTCAATTGATTCAACTCATTATCCTGTCTTCCATCAAgtat---gtccccatatgcagtaactggtttaatctaataataa-----ttaactttatataattttatcttttttattttgtag--------

upper sequence: Vv19s0027g01200.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA02G10060.1 (Glycine max), 5'ss of exon 3
AAGCAGAGCTGTTGAGGAGGGGACACACTCATTTCCTTGTGACTGGAGATGTTTATCATAGAGATTTCATTGATTCAACTCACTA-CCTGTTTTTCATCAGgtttcttatttctgattttatcaatgattgttttctattaacaagtttcttatgttttcttcagttcaataattttgcttcctgatcatgcag
  |||||  | ||||| || | | |||| ||||||||||| || ||||||||||| | ||| ||||  |||||||||||||| || ||||| || ||||| || | |            || |     |  | |  || ||   |  ||  |||  |||| ||  ||  || || | |                
-GGCAGAATTATTGAGAAGTGAATACACCCATTTCCTTGTTACAGGAGATGTTTACCGTAGGGATTCAATTGATTCAACTCATTATCCTGTCTTCCATCAAgtatgtccccatatgcagtaactggcttaatctaataatagtcaactttatataatttcatcttttttattatgtag----------------