Sequence
atgc intronic sequence ATGC exonic sequenceGTCAAGTTTACAGTTGAGGAGCTTCGTAGGATTATGGACTACAAGCATAACATTCGTAATATGTCTGTTATTGCTCATGTTGATCATGgtattaaatcatcttatcctctcttcgctttcttcttattattggcatgtaggattatgggaagttcttgtgatagttctcatgttattcttgcagtcca...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv19s0027g00760.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA08G18110.1 (Glycine max), 5'ss of exon 3
GTCAAGTTTACAGTTGAGGAGCTTCGTAGGATTATGGACTACAAGCATAACATTCGTAATATGTCTGTTATTGCTCATGTTGATCATGgtattaaatcatcttatcctctcttcgctttcttcttattattggcatgtaggattatgg-gaagttcttgtgatagttctcatgttattcttgcagtcca-
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GTGAAGTTCACAGCTGAAGAGCTACGTCGTATTATGGACTATAAGCATAATATCCGTAATATGTCTGTCATTGCTCATGTTGATCACGgtatggatttaaaactaaaagatagcggttactttctctt--tgatgtacctgattgttatgattttgttcccctaccttttgtttttgaacaaagataaat
upper sequence: Vv19s0027g00760.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA15G40860.1 (Glycine max), 5'ss of exon 3
GTCAAGTTTACAGTTGAGGAGCTTCGTAGGATTATGGACTACAAGCATAACATTCGTAATATGTCTGTTATTGCTCATGTTGATCATGgtattaaatcatcttatcctctcttcgctttcttct-tattattggcatgtaggattatgggaagtt-cttgtgatagttctcatgttattcttgcagtcca
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GTGAAGTTCACAGCTGAAGAGCTGCGTCGCATTATGGACTATAAGCATAATATCCGTAATATGTCTGTCATTGCCCATGTTGATCACGgtat-ggattaacagatagtggtttctttctctttgatgtacctgatat-tacaattttgttcctttacccattgctgttttgaatgaagataagtagctttMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110723602|gb|EE101104.1|EE101104EST: CATAACATTCGTAATATGTCTGTTATTGCTCATGTTGATCATG GAAAGTCAACCCTCACAGATTCTTTAGTGGCTGCTGCTGGTATTATTGCTC
genomic: CATAACATTCGTAATATGTCTGTTATTGCTCATGTTGATCATGgtattaaatc ... tgttaaacagGAAAGTCAACCCTCACAGATTCTTTAGTGGCTGCTGCTGGTATTATTGCTC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
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GTCAAGTTTACAGTTGAGGAGCTTCGTAGGATTATGGACTACAAGCATAACATTCGTAATATGTCTGTTATTGCTCATGTTGATCATGgtattaaatcatcttatcctctcttcgctttcttcttattattggcatgtaggattatgggaagttcttgtgatagttctcatgttattcttgcagtcca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tcctctc