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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTTATGAGCATCCGGGTTGTTGTTTTCTCCAGCAAACTCAACTTGCTTATGCCTTTTGGGCCTCTAGCAGTCTTAGTCCATGGTTTGAGTGACCATAATgtgagtttcatatgtttatatactgtctcttgcatatatttattacatatggaatgaattgagtgattctttgctgatttgctatggtggtttacag

Basic information

species Vitis vinifera
transcript Vv19s0015g01320.t01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv19s0015g01320.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA18G08030.1 (Glycine max), 5'ss of exon 3
ATTTATGAGCATCCGGGTTGTTGTTTTCTCCAGCAAACTCAACTTGCTTATGCCTTTTGGGCCTCTAGCAGTCTTAGTCCATGGTTTGAGTGACCATAATgtgagtttcatatgtttatatactgtctcttgcatatatttattacatatggaatgaattgagtgattctttgctgatttgctatggtggtttacag-
 |  | |||||| || ||||| ||||| || | ||||||||||||||||||||||||||||||||| ||| |  | || ||    |||| || ||||  ||||||||  |  ||   | | |   |  ||| |  | | ||        | || |||||      ||  | |  |||||||  | |||||  | ||| 
-TACAAGAGCATACGAGTTGTAGTTTTTTCTAACAAACTCAACTTGCTTATGCCTTTTGGGCCTCTTGCAATTCTTGTGCAGAAGTTGACTGGCCATCTTGtgagttggacttgaa-acaaatcttaactttcccacactt--------tagattgaat------atcttatattgatttgtgaaggtggactgcagg

upper sequence: Vv19s0015g01320.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA08G44920.1 (Glycine max), 5'ss of exon 1
ATTTATGAGCATCCGGGTTGTTGTTTTCTCCAGCAAACTCAACTTGCTTATGCCTTTTGGGCCTCTAGCAGTCTTAGTCCATGGTTTGAGTGACCATAATgtgagtttcatatgtttatatactgtctcttgcatatatttattacatatggaatgaattgagtgattctttgctgatttgctatggtggtttacag
 |  | ||||||  |||||||  |||| || ||||||||||||||||||||||||||||||||||| ||| |  | || ||    |||| ||  ||| |||||||||  || |||| ||||  |     |   |  | | |   || | ||      ||| | | ||  | |  |||| ||  | |||||  | |||
TTACAGGAGCATAAGGGTTGTGCTTTTGTCTAGCAAACTCAACTTGCTTATGCCTTTTGGGCCTCTTGCAATTCTTGTGCAGATATTGACTGGTCATCATgtgagttgtat-tgttcatatcataaaattcttaactttctggcacttttg------attaaat-atgttatattgatatgtgaaggtggactgcag

upper sequence: Vv19s0015g01320.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA08G44910.1 (Glycine max), 5'ss of exon 3
ATTTATGAGCATCCGGGTTGTTGTTTTCTCCAGCAAACTCAACTTGCTTATGCCTTTTGGGCCTCTAGCAGTCTTAGTCCATGGTTTGAGTGACCATAATgtgagtttcatatgtttatatactgtctcttgcatatatttattacatatggaatgaattgagtgattctttgctgatttgctatggtggtttacag
 |  | |||||| |  ||||| || || || | ||||||||||||||||||||||||||||||||| ||| |  | || ||    |||| ||  |||  ||||||||  |    || | | | | |||      ||  |||    ||  |    |  ||||| | ||  | |  |||||||  | |||||  | |||
TTACAGGAGCATACAAGTTGTAGTCTTTTCTAACAAACTCAACTTGCTTATGCCTTTTGGGCCTCTTGCAATTCTTGTACAGAAGTTGACTGGTCATCTTgtgagttggac---ttcaaacaat-tct------taactttccggcactt----tagattgaat-atcttatattgatttgtgaaggtggactgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71863215|gb|DT012270.1|DT012270
EST:     TGCCTTTTGGGCCTCTAGCAGTCTTAGTCCATGGTTTGAGTGACCATAAT                         GGCTGGGTCTTCTTTCTAACCTTGTTAGGGATAACACCATTGGCTGAGCGT
genomic: TGCCTTTTGGGCCTCTAGCAGTCTTAGTCCATGGTTTGAGTGACCATAATgtgagtttca ... tggtttacagGGCTGGGTCTTCTTTCTAACCTTGTTAGGGATAACACCATTGGCTGAGCGT