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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTGGGCTGGCTAGGGTTGTGAATAACAGTGGTGAGGATGATTTCTCCAAAATGGGCCAGAGACCTCACCTTGCTGGCTCTTATGGATACATGGCTCCTGgtaattcttcaattccattttattgttattaattttaattaatgttattttgattaatttcattccattaataatgatttttttgttcatttttgttcttggggtgttaacag

Basic information

species Vitis vinifera
transcript Vv19s0015g01120.t01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv19s0015g01120.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA14G01520.1 (Glycine max), 5'ss of exon 1
TTTGGGCTGGCTAGGGTTGTGAATAACAGTGGTGAGGATGATTTCTCCAAAATGGGCCAGAGACCTCACCTTGCTGGCTCTTATGGATACATGGCTCCTGgtaattcttcaattccattttattgttattaattttaattaatgttattttgattaatttcattccattaataatgatttttttgttcatttttgttcttggggtgttaacag
||||| || || ||  |||  | | | | ||||||  ||  |   ||| |    |  || |||||  ||||||||||||| ||||||||||||||||| |||| || ||  |  | |  |||   ||| | |||||  | | |  |    ||  |||   | ||  | || || | |||||||   |  |||| ||   ||    |       
TTTGGCCTAGCAAGAATTGCAAGTGAAAATGGTGATTATACTAATTCCGAGCCAGTTCAAAGACCCTACCTTGCTGGCTCCTATGGATACATGGCTCCAGgtacttttttcacactaagttagaattagttatttt--tcagtact----tgcataacccc-ttgaaatagtactaattttttg--ttgttttggtatatgtacag-------

upper sequence: Vv19s0015g01120.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA08G44620.1 (Glycine max), 5'ss of exon 1
TTTGGGCTGGCTAGGGTTGTGAATAACAGTGGTGAGGATGATTTCTCCAAAATGGGCCAGAGACCTCACCTTGCTGGCTCTTATGGATACATGGCTCCTGgtaattcttcaattccatttt--attgttattaatttta--attaatgttattttgattaatttca--ttccattaataatgatttttttgttcatttttgttcttggggtgttaacag
||||| ||||| ||   ||  | | | | ||||    ||  |   |||||       || |||| | |||||||||| || |||||||||||||||||||||| ||  |    | ||| |   ||||| |||   |  |  || ||   | ||||     | || |  ||   | || | |||||||  |    |  |||                   
TTTGGCCTGGCAAGAACTGCAACTGAAAATGGTTGCAATACTGATTCCAAGCCACTTCAAAGACATTACCTTGCTGGTTCATATGGATACATGGCTCCTGgtattttattttattcatctaaaattgtgattttctggaggataaaatatgttttaggccacttaagatttggtcaaaattgattttagttcctacattt-------------------

upper sequence: Vv19s0015g01120.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA18G08190.1 (Glycine max), 5'ss of exon 1
TTTGGGCTGGCTAGGGTTGTGAATAACAGTGGTGAGGATGATTTCTCCAAAATGGGCCAGAGACCTCACCTTGCTGGCTCTTATGGATACATGGCTCCTGgtaattcttcaattccattttattgttattaattttaattaatgttattttgattaatttcattccattaataatgatttttttgttcatttttgttcttggggtgttaacag
 |||| ||||| ||   ||  | | | | ||||||  ||  |   |||||       || ||||   |||||||||| || |||||||||||||||||||||| ||     |||  |||||||| ||  ||        |||  ||| ||   | | ||||  |    ||| |||   ||||  |||  |      |||     || ||| | 
-TTGGCCTGGCAAGAACTGCAACTGAAAATGGTGACAATACTGATTCCAAGCCACTTCAAAGACACTACCTTGCTGGTTCATATGGATACATGGCTCCTGGtatttt----attttattttattttttcta-------ctaaaattaattgagtgattttctgtagggtaa-aatatgttttaggttactcaagaatctacacttggtaaaaa

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161706099|gb|FC057158.1|FC057158
EST:     AATGGGCCAGAGACCTCACCTTGCTGGCTCTTATGGATACATGGCTCCTG                         AACATGCTTCAATGCAACGTATCACAGAGAAGAGCGATGTTTACAGTTTTG
genomic: AATGGGCCAGAGACCTCACCTTGCTGGCTCTTATGGATACATGGCTCCTGgtaattcttc ... gtgttaacagAACATGCTTCAATGCAACGTATCACAGAGAAGAGCGATGTTTACAGTTTTG
EST: gi|161715960|gb|FC067138.1|FC067138
EST:     AATGGGCCAGAGACCTCACCTTGCTGGCTCTTATGGATACATGGCTCCTG                         AACATGCTTCAATGCAACGTATCACAGAGAAGAGCGATGTTTACAGTTTTG
genomic: AATGGGCCAGAGACCTCACCTTGCTGGCTCTTATGGATACATGGCTCCTGgtaattcttc ... gtgttaacagAACATGCTTCAATGCAACGTATCACAGAGAAGAGCGATGTTTACAGTTTTG