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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAGATTTTTATCGGAGGATTAGCGAAAGATACGACCTATGgtgagagtttgcctttgcttccccatgatttcttttatttagcccttttgtcttgtggatctgtttgctagcaagggaaaatttttctcgtgtaaaaatg...

Basic information

species Vitis vinifera
transcript Vv19s0015g00920.t01
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|352763667|gb|FQ473370.1|FQ473370
EST:     GAAGATTTTTATCGGAGGATTAGCGAAAGATACGACCTATG                         CGACATTTAATAAGCACTTTGGGAAATATGGAGACATAACTGACTCTGTGA
genomic: GAAGATTTTTATCGGAGGATTAGCGAAAGATACGACCTATGgtgagagttt ... tgaattgtagCGACATTTAATAAGCACTTTGGGAAATATGGAGACATAACTGACTCTGTGA
EST: gi|161716270|gb|FC065867.1|FC065867
EST:     GAAGATTTTTATCGGAGGATTGGCGAAAGATACGACCTATG                         CGACATTTAATAAGCACTTTGGGAAATATGGGGACATAACTGACTCTGTGA
genomic: GAAGATTTTTATCGGAGGATTAGCGAAAGATACGACCTATGgtgagagttt ... tgaattgtagCGACATTTAATAAGCACTTTGGGAAATATGGAGACATAACTGACTCTGTGA
EST: gi|71857093|gb|DT006148.1|DT006148
EST:     GAAGATTTTTATCGGAGGATTGGCGAAAGATACGACCTATG                         CGACATTTAATAAGCACTTTGGGAAATATGGGGACATAACTGACTCTGTGA
genomic: GAAGATTTTTATCGGAGGATTAGCGAAAGATACGACCTATGgtgagagttt ... tgaattgtagCGACATTTAATAAGCACTTTGGGAAATATGGAGACATAACTGACTCTGTGA
EST: gi|352769251|gb|FQ471400.1|FQ471400
EST:     GAAGATTTTTATCGGAGGATTAGCGAAAGATACGACCTATG                         CGACATTTAATAAGCACTTTGGGAAATATGGAGACATAACTGACTCTGTGA
genomic: GAAGATTTTTATCGGAGGATTAGCGAAAGATACGACCTATGgtgagagttt ... tgaattgtagCGACATTTAATAAGCACTTTGGGAAATATGGAGACATAACTGACTCTGTGA
EST: gi|352781290|gb|FQ467371.1|FQ467371
EST:     GAAGATTTTTATCGGAGGATTAGCGAAAGATACGACCTATG                         CGACATTTAATAAGCACTTTGGGAAATATGGAGACATAACTGACTCTGTGA
genomic: GAAGATTTTTATCGGAGGATTAGCGAAAGATACGACCTATGgtgagagttt ... tgaattgtagCGACATTTAATAAGCACTTTGGGAAATATGGAGACATAACTGACTCTGTGA
EST: gi|352790928|gb|FQ477376.1|FQ477376
EST:     GAAGATTTTTATCGGAGGATTAGCGAAAGATACGACCTATG                         CGACATTTAATAAGCACTTTGGGAAATATGGAGACATAACTGACTCTGTGA
genomic: GAAGATTTTTATCGGAGGATTAGCGAAAGATACGACCTATGgtgagagttt ... tgaattgtagCGACATTTAATAAGCACTTTGGGAAATATGGAGACATAACTGACTCTGTGA
EST: gi|71857169|gb|DT006224.1|DT006224
EST:     GAAGATTTTTATCGGAGGATTGGCGAAAGATACGACCTATG                         CGACATTTAATAAGCACTTTGGGAAATATGGGGACATAACTGACTCTGTGA
genomic: GAAGATTTTTATCGGAGGATTAGCGAAAGATACGACCTATGgtgagagttt ... tgaattgtagCGACATTTAATAAGCACTTTGGGAAATATGGAGACATAACTGACTCTGTGA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GAAGATTTTTATCGGAGGATTAGCGAAAGATACGACCTATGgtgagagtttgcctttgcttccccatgatttcttttatttagcccttttgtcttgtggatctgtttgctagcaagggaaaatttttctcgtgtaaaaatg

- - - - - -  GGAGGA
- - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cttcccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gggaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtaaaaa