1 5' 3' | 2 5' 3' | 3 5' 3' |
GCCAAGTCAACAGAGAAGCCATGTCCTATTGTAATGAGGgttagtattttgggcccttatctcatttgtcaacctgtacggttcatgtcaattatttttcgaccactgaacagactaattttgagatatgtatgacatg...
species | Vitis vinifera |
transcript | Vv19s0014g04970.t01 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GCCAAGTCAACAGAGAAGCCATGTCCTATTGTAATGAGG CTTAAGCGATGGGAGCGGAAGGAATGCAAACCCAACGGCCTTCCGGTGCTAEST: gi|110382404|gb|EC939388.1|EC939388
genomic: GCCAAGTCAACAGAGAAGCCATGTCCTATTGTAATGAGGgttagtattt ... cctcatgcagCTTAAGCGATGGGAGCGGAAGGAATGCAAACCCAACAGCCTTCCGGTGCTA
EST: GCCAAGTCAACAGAGAAGCCATGTCCTATTGTAATGAGG CTTAAGCGATGGGAGCGGAAGGAATGCAAACCCAACAGCCTTCCGGTGCTAEST: gi|110372992|gb|EC937192.1|EC937192
genomic: GCCAAGTCAACAGAGAAGCCATGTCCTATTGTAATGAGGgttagtattt ... cctcatgcagCTTAAGCGATGGGAGCGGAAGGAATGCAAACCCAACAGCCTTCCGGTGCTA
EST: GCCAAGTCAACAGAGAAGCCATGTCCTATTGTAATGAGG CTTAAGCGATGGGAGCGGAAGGAATGCAAACCCAACAGCCTTCCGGTGCTAEST: gi|34543402|gb|CF511634.1|CF511634
genomic: GCCAAGTCAACAGAGAAGCCATGTCCTATTGTAATGAGGgttagtattt ... cctcatgcagCTTAAGCGATGGGAGCGGAAGGAATGCAAACCCAACAGCCTTCCGGTGCTA
EST: GCCAAGTCAACAGAGAAGCCATGTCCTATTGTAATGAGG CTTAAGCGATGGGAGCGGAAGGAATGCAAACCCAACGGCCTTCCGGTGCTA
genomic: GCCAAGTCAACAGAGAAGCCATGTCCTATTGTAATGAGGgttagtattt ... cctcatgcagCTTAAGCGATGGGAGCGGAAGGAATGCAAACCCAACAGCCTTCCGGTGCTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCCAAGTCAACAGAGAAGCCATGTCCTATTGTAATGAGGgttagtattttgggcccttatctcatttgtcaacctgtacggttcatgtcaattatttttcgaccactgaacagactaattttgagatatgtatgacatg
- - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaacaga