Sequence
atgc intronic sequence ATGC exonic sequenceTGGTCCTGTTTATAAAGCTCAGATGTCAACCGGTGAGACGGTTGCTGTTAAAGTGCTTGCAACTGACTCTAAGCAAGGGGAGAAGGAGTTCCAAACAGAGgtaataattaatttttaggccatgttagatacaagtattcttcctgaataagttccaacacacatagacatatgtgtaccttgggcatgaacattatttg...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv19s0014g04960.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: LOC_Os08g04420.1 (Oryza sativa), 5'ss of exon 2
TGGTCCTGTTTATAAAGCTCAGATGTCAACCGGTGAGACGGTTGCTGTTAAAGTGCTTGCAACTGACTCTAAGCAAGGGGAGAAGGAGTTCCAAACAGAGgtaataattaatttttaggccatgttagatacaagtattcttcctgaataagttccaacacacatagacatatgtgtaccttgggcatgaacattatttg
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TGGTCCTGTTTATAAAGCTGATTTGTCATCTGGTGAAACTCTTGCTGTTAAAGTGCTTGCTAACAATTCAAAGCAAGGTGAAAAGGAGTTTCAAACTGAGgtaa--gccaatctttatgc---gccagaaactctgactgcttggtatttatttgatagactgttaatttcag---------------------------
upper sequence: Vv19s0014g04960.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA06G41510.1 (Glycine max), 5'ss of exon 3
TGGTCCTGTTTATAAAGCTCAGATGTCAACCGGTGAGACGGTTGCTGTTAAAGTGCTTGCAACTGACTCTAAGCAAGGGGAGAAGGAGTTCCAAACAGAGgtaataattaatttttaggccatgttagatacaagtattcttcctgaataagttccaacacacatagacatatgtgtaccttgggcatgaacattatttg----
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TGGTCCTGTTTATAAAGCTCAGATGTCTACCGGTGAGACTGTTGCAGTTAAAGTTCTTGCAACTAATTCTAAGCAAGGGGAGAAAGAATTTAACACAGAGgtaggttgccaatgtcattttccgttactt-tggccactccac-tgatagaattatgctgtgtttcatgacataaatttcagggcca--agcgtttttagattt
upper sequence: Vv19s0014g04960.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA12G34410.1 (Glycine max), 5'ss of exon 3
TGGTCCTGTTTATAAAGCTCAGATGTCAACCGGTGAGACGGTTGCTGTTAAAGTGCTTGCAACTGACTCTAAGCAAGGGGAGAAGGAGTTCCAAACAGAGgtaataat--taatttttaggccatgttagataca-agtattcttcctgaataagttccaacacacatagacatatgtgtaccttgggcatgaacattatttg
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TGGTCCTGTATATAAAGCTCAGATGTCTACTGGCGAGACTGTTGCAGTTAAAGTTCTTGCAACTAATTCTAAGCAAGGGGAGAAAGAATTTCAGACAGAGgtgaagataataatttctcattactttgagatgcatagaagtattgttagctacatatcattttgaaaaatcaaa---acacgagaaatacgattttactata
upper sequence: Vv19s0014g04960.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA12G16650.1 (Glycine max), 5'ss of exon 2
TGGTCCTGTTTATAAAGCTCAGATGTCAACCGGTGAGACGGTTGCTGTTAAAGTGCTTGCAACTGACTCTAAGCAAGGGGAGAAGGAGTTCCAAACAGAGgtaataattaatttttaggccatgttagatacaagtattcttcctgaataagttccaacacacatagacatatgtgtaccttgggcatgaacatta--tttg
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TGGTCCTGTTTATAAAGCTCAGATGTCTACTGGTGAGACTGTTGCAGTTAAAGTTCTTGCAATGAATTCTAAGCAAGGGGAGAAAGAATTTCACACAGAGgttggttgccgatgtcatgtaccattacttt--ggccacaccactgatagaattatgctgtgtttcatggcataaatttcagggccaattgtattagatttg
upper sequence: Vv19s0014g04960.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA13G36140.1 (Glycine max), 5'ss of exon 3
TGGTCCTGTTTATAAAGCTCAGATGTCAACCGGTGAGACGGTTGCTGTTAAAGTGCTTGCAACTGACTCTAAGCAAGGGGAGAAGGAGTTCCAAACAGAGgt------aataattaatttttaggccatgttagatacaagtattcttc-ctgaataagttccaacacacatagacatatgtgtaccttgggcatgaacattatttg
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TGGTCCTGTATATAAAGCTCAGATGTCTACTGGCGAGACTGTGGCAGTCAAAGTTCTTGCAACTAATTCTAAGCAAGGGGAGAAAGAATTTCAGACAGAGgtgaagataataatttttcattactttggggtgaataaaagtattgatgaccacatatccttttggaaa-atcaaaacatgaaaaatattatttttactat------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161713605|gb|FC063415.1|FC063415EST: AAGTGCTTGCAACTGACTCTAAGCAAGGGGAGAAGGAGTTCCAAACAGAG GTTCACTTACTGGGAAGGTTACATCATAGAAACCTCGTGAATTTGGTTGGG
genomic: AAGTGCTTGCAACTGACTCTAAGCAAGGGGAGAAGGAGTTCCAAACAGAGgtaataatta ... ttgttctcagGTTCACTTACTGGGAAGGTTACATCATAGAAACCTCGTGAATTTGGTTGGG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGGTCCTGTTTATAAAGCTCAGATGTCAACCGGTGAGACGGTTGCTGTTAAAGTGCTTGCAACTGACTCTAAGCAAGGGGAGAAGGAGTTCCAAACAGAGgtaataattaatttttaggccatgttagatacaagtattcttcctgaataagttccaacacacatagacatatgtgtaccttgggcatgaacattatttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gatacaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaataag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aacacaca