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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGTATGGAACATATAGTCTGGTTGATGATAATGAGGACCTCACAAATGCCTCTCTCCGGTTCCGGCTACTAAGACAAGAAGGTTACGGCGTTCCATCTGgtaaaagcccctgtcccatagctgccaaaaaatatatatgtcatcttgaattacttagtattgatttaatggttaattttgctgatgaaatag

Basic information

species Vitis vinifera
transcript Vv19s0014g01060.t01
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161718647|gb|FC068223.1|FC068223
EST:     CTCTCTCCGGTTCCGGCTACTAAGACAAGAAGGTTACGGCGTTCCATCTG                         ATGTATTTAGTAAGTTCAAAGACAAGGAAGGCAACTTCAAGGAATCTTTGA
genomic: CTCTCTCCGGTTCCGGCTACTAAGACAAGAAGGTTACGGCGTTCCATCTGgtaaaagccc ... gatgaaatagATGTATTTAGTAAGTTCAAAGACAAGGAAGGCAACTTCAAGGAATCTTTGA
EST: gi|161720883|gb|FC069617.1|FC069617
EST:     CTCTCTCCGGTTCCGGCTACTAAGACAAGAAGGTTACGGCGTTCCATCTG                         ATGTATTTAGTAAGTTCAAAGACAAGGAAGGCAACTTCAAGGAATCTTTGA
genomic: CTCTCTCCGGTTCCGGCTACTAAGACAAGAAGGTTACGGCGTTCCATCTGgtaaaagccc ... gatgaaatagATGTATTTAGTAAGTTCAAAGACAAGGAAGGCAACTTCAAGGAATCTTTGA
EST: gi|161721314|gb|FC069710.1|FC069710
EST:     CTCTCTCCGGTTCCGGCTACTAAGACAAGAAGGTTACGGCGTTCCATCTG                         ATGTATTTAGTAAGTTCAAAGACAAGGAAGGCAACTTCAAGGAATCTTTGA
genomic: CTCTCTCCGGTTCCGGCTACTAAGACAAGAAGGTTACGGCGTTCCATCTGgtaaaagccc ... gatgaaatagATGTATTTAGTAAGTTCAAAGACAAGGAAGGCAACTTCAAGGAATCTTTGA
EST: gi|161713536|gb|FC063131.1|FC063131
EST:     CTCTCTCCGGTTCCGGCTACTAAGACAAGAAGGTTACGGCGTTCCATCTG                         ATGTATTTAGTAAGTTCAAAGACAAGGAAGGCAACTTCAAGGAATCTTTGA
genomic: CTCTCTCCGGTTCCGGCTACTAAGACAAGAAGGTTACGGCGTTCCATCTGgtaaaagccc ... gatgaaatagATGTATTTAGTAAGTTCAAAGACAAGGAAGGCAACTTCAAGGAATCTTTGA
EST: gi|161717072|gb|FC065908.1|FC065908
EST:     CTCTCTCCGGTTCCGGCTACTAAGACAAGAAGGTTACGGCGTTCCATCTG                         ATGTATTTAGTAAGTTCAAAGACAAGGAAGGCAACTTCAAGGAATCTTTGA
genomic: CTCTCTCCGGTTCCGGCTACTAAGACAAGAAGGTTACGGCGTTCCATCTGgtaaaagccc ... gatgaaatagATGTATTTAGTAAGTTCAAAGACAAGGAAGGCAACTTCAAGGAATCTTTGA
EST: gi|161711282|gb|FC059092.1|FC059092
EST:     CTCTCTCCGGTTCCGGCTACTAAGACAAGAAGGTTACGGCGTTCCATCTG                         ATGTATTTAGTAAGTTCAAAGACAAGGAAGGCAACTTCAAGGAATCTTTGA
genomic: CTCTCTCCGGTTCCGGCTACTAAGACAAGAAGGTTACGGCGTTCCATCTGgtaaaagccc ... gatgaaatagATGTATTTAGTAAGTTCAAAGACAAGGAAGGCAACTTCAAGGAATCTTTGA
EST: gi|161713949|gb|FC062602.1|FC062602
EST:     CTCTCTCCGGTTCCGGCTACTAAGACAAGAAGGTTACGGCGTTCCATCTG                         ATGTATTTAGTAAGTTCAAAGACAAGGAAGGCAACTTCAAGGAATCTTTGA
genomic: CTCTCTCCGGTTCCGGCTACTAAGACAAGAAGGTTACGGCGTTCCATCTGgtaaaagccc ... gatgaaatagATGTATTTAGTAAGTTCAAAGACAAGGAAGGCAACTTCAAGGAATCTTTGA
EST: gi|161717806|gb|FC064737.1|FC064737
EST:     CTCTCTCCGGTTCCGGCTACTAAGACAAGAAGGTTACGGCGTTCCATCTG                         ATGTATTTAGTAAGTTCAAAGACAAGGAAGGCAACTTCAAGGAATCTTTGA
genomic: CTCTCTCCGGTTCCGGCTACTAAGACAAGAAGGTTACGGCGTTCCATCTGgtaaaagccc ... gatgaaatagATGTATTTAGTAAGTTCAAAGACAAGGAAGGCAACTTCAAGGAATCTTTGA
EST: gi|161714892|gb|FC063043.1|FC063043
EST:     CTCTCTCCGGTTCCGGCTACTAAGACAAGAAGGTTACGGCGTTCCATCTG                         ATGTATTTAGTAAGTTCAAAGACAAGGAAGGCAACTTCAAGGAATCTTTGA
genomic: CTCTCTCCGGTTCCGGCTACTAAGACAAGAAGGTTACGGCGTTCCATCTGgtaaaagccc ... gatgaaatagATGTATTTAGTAAGTTCAAAGACAAGGAAGGCAACTTCAAGGAATCTTTGA
EST: gi|161719125|gb|FC065714.1|FC065714
EST:     CTCTCTCCGGTTCCGGCTACTAAGACAAGAAGGTTACGGCGTTCCATCTG                         ATGTATTTAGTAAGTTCAAAGACAAGGAAGGCAACTTCAAGGAATCTTTGA
genomic: CTCTCTCCGGTTCCGGCTACTAAGACAAGAAGGTTACGGCGTTCCATCTGgtaaaagccc ... gatgaaatagATGTATTTAGTAAGTTCAAAGACAAGGAAGGCAACTTCAAGGAATCTTTGA
EST: gi|161720571|gb|FC069905.1|FC069905
EST:     CTCTCTCCGGTTCCGGCTACTAAGACAAGAAGGTTACGGCGTTCCATCTG                         ATGTATTTAGTAAGTTCAAAGACAAGGAAGGCAACTTCAAGGAATCTTTGA
genomic: CTCTCTCCGGTTCCGGCTACTAAGACAAGAAGGTTACGGCGTTCCATCTGgtaaaagccc ... gatgaaatagATGTATTTAGTAAGTTCAAAGACAAGGAAGGCAACTTCAAGGAATCTTTGA
EST: gi|161708835|gb|FC060901.1|FC060901
EST:     CTCTCTCCGGTTCCGGCTACTAAGACAAGAAGGTTACGGCGTTCCATCTG                         ATGTATTTAGTAAGTTCAAAGACAAGGAAGGCAACTTCAAGGAATCTTTGA
genomic: CTCTCTCCGGTTCCGGCTACTAAGACAAGAAGGTTACGGCGTTCCATCTGgtaaaagccc ... gatgaaatagATGTATTTAGTAAGTTCAAAGACAAGGAAGGCAACTTCAAGGAATCTTTGA
EST: gi|161720978|gb|FC070693.1|FC070693
EST:     CTCTCTCCGGTTCCGGCTACTAAGACAAGAAGGTTACGGCGTTCCATCTG                         ATGTATTTAGTAAGTTCAAAGACAAGGAAGGCAACTTCAAGGAATCTTTGA
genomic: CTCTCTCCGGTTCCGGCTACTAAGACAAGAAGGTTACGGCGTTCCATCTGgtaaaagccc ... gatgaaatagATGTATTTAGTAAGTTCAAAGACAAGGAAGGCAACTTCAAGGAATCTTTGA
EST: gi|161712255|gb|FC061878.1|FC061878
EST:     CTCTCTCCGGTTCCGGCTACTAAGACAAGAAGGTTACGGCGTTCCATCTG                         ATGTATTTAGTAAGTTCAAAGACAAGGAAGGCAACTTCAAGGAATCTTTGA
genomic: CTCTCTCCGGTTCCGGCTACTAAGACAAGAAGGTTACGGCGTTCCATCTGgtaaaagccc ... gatgaaatagATGTATTTAGTAAGTTCAAAGACAAGGAAGGCAACTTCAAGGAATCTTTGA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ATGTATGGAACATATAGTCTGGTTGATGATAATGAGGACCTCACAAATGCCTCTCTCCGGTTCCGGCTACTAAGACAAGAAGGTTACGGCGTTCCATCTGgtaaaagcccctgtcccatagctgccaaaaaatatatatgtcatcttgaattacttagtattgatttaatggttaattttgctgatgaaatag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG