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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGATCACCCCAATTGTGACTTCTGGACTGGTGATGCAACTCTTGGCCGGGTCAAAAATTATTGAAGTGGACAACAATGTGCGCGAGGATCGCGCTCTCTTgtaagtatcctttaggctaagttctatttgggtttttggtcagatgtgatacatttcatgtactatctgtgatctagagatattattctcactgctacat...

Basic information

species Vitis vinifera
transcript Vv19s0014g01020.t01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv19s0014g01020.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: LOC_Os09g17840.1 (Oryza sativa), 5'ss of exon 1
GGATCACCCCAATTGTGACTTCTGGACTGGTGATGCAACTCTTGGCCGGGTCAAAAATTATTGAAGTGGACAACAATGTGCGCGAGGATCGCGCTCTCTTgtaagtatcctttaggctaagttctatttgggtttttggtcagatgtgatacatttcatgtactatctgtgatctag-agatattattctcactgctacat----------------------------------------------------------------------------
| || |||||||||||||| |||||| |||| ||||||||  | |  || ||||| ||||||||||| ||||||| |||| | ||||| || || ||  |||||||||   |     |||       |    ||| | |   |||   ||        | || | |   ||  ||   ||  | | ||||  ||  |   |                                                                            
GTATTACCCCAATTGTGACATCTGGAATGGTAATGCAACTTCTAGTGGGATCAAAGATTATTGAAGTTGACAACAGTGTGAGAGAGGACCGTGCACTTCTgtaagtatttatagaaataacacaatctcctatttattggtggataacatgttcagagtctagtgtgcatgtactgctagccagtcttctacctagtgttttagctaacatcagaaaattgcagagcttccttattctttttctttctcctggtggtaatcttttgatgtgacttag

upper sequence: Vv19s0014g01020.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: LOC_Os09g17830.1 (Oryza sativa), 5'ss of exon 1
GGATCACCCCAATTGTGACTTCTGGACTGGTGATGCAACTCTTGGCCGGGTCAAAAATTATTGAAGTGGACAACAATGTGCGCGAGGATCGCGCTCTCTTgtaagtatcctttaggctaa-gttctatttgggtttttg--gtcagatgtgatacatttcatgtact--atctgtgatctagagatattattctcac-tgctacat----------------------------------------------------------------
| || |||||||||||||| |||||| |||| ||||||||  | |  || ||||| ||||||||||| ||||||| |||| | ||||| || || ||  |||||||||   |     ||  |   |||     ||| |   |||  || |  |     | ||||  |     | | || |  |  || |  |  |   | || ||                                                                 
GTATTACCCCAATTGTGACATCTGGAATGGTAATGCAACTTCTAGTGGGATCAAAGATTATTGAAGTTGACAACAGTGTGAGAGAGGACCGTGCACTTCTgtaagtatttatagaaatagcgcaatatcctattttatattgtcttatatattggtggtaatgtgttcagagtctaatgtgcatgtactgctagcctgtcctgcacctagtgatttagtgaatgaaagttttttttttttgcctggtggtaatcttgtgatgtgactcag

upper sequence: Vv19s0014g01020.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: LOC_Os03g11440.1 (Oryza sativa), 5'ss of exon 2
GGATCACCCCAATTGTGACTTCTGGACTGGTGATGCAACTCTTGGCCGGGTCAAAAATTATTGAAGTGGACAACAATGTGCGCGAGGATCGCGCTCTCTTgtaagtatcct-----ttaggctaagttctatttgggtttttgg----tcagatgtgatacatttcatg-tactatctgtgatctagag---atattattctcactgctacat-------------------------------------------------------------------------------------
| ||||| ||||||||||| |||||  |||| ||||||||  | |  || ||||| || |||||||| ||||||| |||| | |||||||| |||||  |||||||||  |     | |  ||| ||||| |     |   ||     | | |  |  | | ||   |  ||   ||||   | |  ||   |   ||||    |   |   |                                                                                     
GTATCACTCCAATTGTGACATCTGGCATGGTAATGCAACTTCTAGTGGGATCAAAGATCATTGAAGTTGACAACAGTGTGAGAGAGGATCGTGCTCTGCTgtaagtattatgagattaacactatgttctttactattacctgaaccttgaaacttagtgccttatttactatggtctgctgtttgtagcccaccatatttcagcgaatggctattgattaaatgctactacgtatctgattcatgtttaccatgtcttttgattatatttgttacgctaatgtacttttttacccag

upper sequence: Vv19s0014g01020.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GRMZM2G307252_T01 (Zea mays), 5'ss of exon 2
GGATCACCCCAATTGTGACTTCTGGACTGGTGATGCAACTCTTGGCCGGGTCAAAAATTATTGAAGTGGACAACAATGTGCGCGAGGATCGCGCTCTCTTgtaagtatcctt--------taggc--taagttctatttgggtttttgg-----tcagatgtgatacatttcatgtactatctgtgatctagagatattattctcactgctacat--------------------------------------------------
| ||||| |||||||| || |||||| |||||||||||||  | |  || ||||| ||||||||||| ||||||| |||| | |||||||| |||||  ||||||| |  ||        ||| |   || |||||| ||  ||  |||     |    | |    | ||| ||  | |  |||  ||  |||  |   |  ||   || |   |                                                  
GTATCACTCCAATTGTAACATCTGGAATGGTGATGCAACTTCTAGTGGGATCAAAGATTATTGAAGTTGACAACAGTGTGAGGGAGGATCGTGCTCTGCTgtaagtgttgttgggtagtatagacatcaaattctatatgtattggtggatgctttgattatccatccttttatcaattgactgacattgagaactgcaaagctttatggtttttattcttgtatctggtgttttcatgtgattcatagtgtactttttacccag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351033025|gb|FQ461914.1|FQ461914
EST:     TCAAAAATTATTGAAGTGGACAACAATGTGCGCGAGGATCGCGCTCTCTT                         GAATGGTGCACAAAAACTACTGGGCATCCTGATAGCTGTTGGTGAAGCTGT
genomic: TCAAAAATTATTGAAGTGGACAACAATGTGCGCGAGGATCGCGCTCTCTTgtaagtatcc ... ttcctctcagGAATGGTGCACAAAAACTACTGGGCATCCTGATAGCTGTTGGTGAAGCTGT
EST: gi|351055154|gb|FQ440493.1|FQ440493
EST:     TCAAAAATTATTGAAGTGGACAACAATGTGCGCGAGGATCGCGCTCTCTT                         GAATGGTGCACAAAAACTACTGGGCATCCTGATAGCTGTTGGTGAAGCTGT
genomic: TCAAAAATTATTGAAGTGGACAACAATGTGCGCGAGGATCGCGCTCTCTTgtaagtatcc ... ttcctctcagGAATGGTGCACAAAAACTACTGGGCATCCTGATAGCTGTTGGTGAAGCTGT
EST: gi|110688222|gb|EE066526.1|EE066526
EST:     TCAAAGATTATTGAAGTGGACAACAATGTGCGCGAGGATCGTGCTCTCTT                         GAATGGTGCACAAAAGCTACTGGGCATCCTGATAGCTGTTGGTGAAGCTGT
genomic: TCAAAAATTATTGAAGTGGACAACAATGTGCGCGAGGATCGCGCTCTCTTgtaagtatcc ... ttcctctcagGAATGGTGCACAAAAACTACTGGGCATCCTGATAGCTGTTGGTGAAGCTGT
EST: gi|77582547|gb|DV220253.1|DV220253
EST:     TCAAAAATTATTGAAGTGGACAACAATGTGCGCGAGGATCGCGCTCTCTT                         GAATGGTGCACAAAAACTACTGGGCATCCTGATAGCTGTTGGTGAAGCTGT
genomic: TCAAAAATTATTGAAGTGGACAACAATGTGCGCGAGGATCGCGCTCTCTTgtaagtatcc ... ttcctctcagGAATGGTGCACAAAAACTACTGGGCATCCTGATAGCTGTTGGTGAAGCTGT
EST: gi|352794208|gb|FQ479450.1|FQ479450
EST:     TCAAAGATTATTGAAGTGGACAACAATGTGCGCGAGGATCGTGCTCTCTT                         GAATGGTGCGCAAAAGCTACTGGGCATCCTGATAGCTGTTGGTGAAGCTGT
genomic: TCAAAAATTATTGAAGTGGACAACAATGTGCGCGAGGATCGCGCTCTCTTgtaagtatcc ... ttcctctcagGAATGGTGCACAAAAACTACTGGGCATCCTGATAGCTGTTGGTGAAGCTGT
EST: gi|161718407|gb|FC066312.1|FC066312
EST:     TCAAAAATTATTGAAGTGGACAACAATGTGCGCGAGGATCGCGCTCTCTT                         GAATGGTGCACAAAAACTACTGGGCATCCTGATAGCTGTTGGTGAAGCTGT
genomic: TCAAAAATTATTGAAGTGGACAACAATGTGCGCGAGGATCGCGCTCTCTTgtaagtatcc ... ttcctctcagGAATGGTGCACAAAAACTACTGGGCATCCTGATAGCTGTTGGTGAAGCTGT
EST: gi|71855692|gb|DT004747.1|DT004747
EST:     TCAAAAATTATTGAAGTGGACAACAATGTGCGCGAGGATCGCGCTCTCTT                         GAATGGTGCACAAAAACTACTGGGCATCCTGATAGCTGTTGGTGAAGCTGT
genomic: TCAAAAATTATTGAAGTGGACAACAATGTGCGCGAGGATCGCGCTCTCTTgtaagtatcc ... ttcctctcagGAATGGTGCACAAAAACTACTGGGCATCCTGATAGCTGTTGGTGAAGCTGT
EST: gi|351035297|gb|FQ459564.1|FQ459564
EST:     TCAAAGATTATTGAAGTGGACAACAATGTGCGCGAGGATCGTGCTCTCTT                         GAATGGTGCGCAAAAGCTACTGGGCATCCTGATAGCTGTTGGTGAAGCTGT
genomic: TCAAAAATTATTGAAGTGGACAACAATGTGCGCGAGGATCGCGCTCTCTTgtaagtatcc ... ttcctctcagGAATGGTGCACAAAAACTACTGGGCATCCTGATAGCTGTTGGTGAAGCTGT
EST: gi|351024773|gb|FQ430598.1|FQ430598
EST:     TCAAAAATTATTGAAGTGGACAACAATGTGCGCGAGGATCGCGCTCTCTT                         GAATGGTGCACAAAAACTACTGGGCATCCTGATAGCTGTTGGTGAAGCTGT
genomic: TCAAAAATTATTGAAGTGGACAACAATGTGCGCGAGGATCGCGCTCTCTTgtaagtatcc ... ttcctctcagGAATGGTGCACAAAAACTACTGGGCATCCTGATAGCTGTTGGTGAAGCTGT
EST: gi|110690618|gb|EE067885.1|EE067885
EST:     TCAAAAATTATTGAAGTGGACAACAATGTGCGCGAGGATCGCGCTCTCTT                         GAATGGTGCACAAAAACTACTGGGCATCCTGATAGCTGTTGGTGAAGCTGT
genomic: TCAAAAATTATTGAAGTGGACAACAATGTGCGCGAGGATCGCGCTCTCTTgtaagtatcc ... ttcctctcagGAATGGTGCACAAAAACTACTGGGCATCCTGATAGCTGTTGGTGAAGCTGT
EST: gi|351047396|gb|FQ451908.1|FQ451908
EST:     TCAAAGATTATTGAAGTGGACAACAATGTGCGCGAGGATCGTGCTCTCTT                         GAATGGTGCGCAAAAGCTACTGGGCATCCTGATAGCTGTTGGTGAAGCTGT
genomic: TCAAAAATTATTGAAGTGGACAACAATGTGCGCGAGGATCGCGCTCTCTTgtaagtatcc ... ttcctctcagGAATGGTGCACAAAAACTACTGGGCATCCTGATAGCTGTTGGTGAAGCTGT
EST: gi|161711947|gb|FC059564.1|FC059564
EST:     TCAAAAATTATTGAAGTGGACAACAATGTGCGCGAGGATCGCGCTCTCTT                         GAATGGTGCACACAAACTACTGGGCATCCTGATAGCTGTTGGTGAAGCTGT
genomic: TCAAAAATTATTGAAGTGGACAACAATGTGCGCGAGGATCGCGCTCTCTTgtaagtatcc ... ttcctctcagGAATGGTGCACAAAAACTACTGGGCATCCTGATAGCTGTTGGTGAAGCTGT
EST: gi|351027632|gb|FQ446796.1|FQ446796
EST:     TCAAAAATTATTGAAGTGGACAACAATGTGCGCGAGGATCGCGCTCTCTT                         GAATGGTGCACAAAAACTACTGGGCATCCTGATAGCTGTTGGTGAAGCTGT
genomic: TCAAAAATTATTGAAGTGGACAACAATGTGCGCGAGGATCGCGCTCTCTTgtaagtatcc ... ttcctctcagGAATGGTGCACAAAAACTACTGGGCATCCTGATAGCTGTTGGTGAAGCTGT
EST: gi|349829390|gb|FQ419922.1|FQ419922
EST:     TCAAAGATTATTGAAGTGGACAACAATGTGCGCGAGGATCGTGCTCTCTT                         GAATGGTGCACAAAAGCTACTGGGCATCCTGATAGCTGTTGGTGAAGCTGT
genomic: TCAAAAATTATTGAAGTGGACAACAATGTGCGCGAGGATCGCGCTCTCTTgtaagtatcc ... ttcctctcagGAATGGTGCACAAAAACTACTGGGCATCCTGATAGCTGTTGGTGAAGCTGT
EST: gi|110698206|gb|EE075492.1|EE075492
EST:     TCAAAAATTATTGAAGTGGACAACAATGTGCGCGAGGATCGCGCTCTCTT                         GAATGGTGCACAAAAACTACTGGGCATCCTGATAGCTGTTGGTGAAGCTGT
genomic: TCAAAAATTATTGAAGTGGACAACAATGTGCGCGAGGATCGCGCTCTCTTgtaagtatcc ... ttcctctcagGAATGGTGCACAAAAACTACTGGGCATCCTGATAGCTGTTGGTGAAGCTGT
EST: gi|351028323|gb|FQ427219.1|FQ427219
EST:     TCAAAGATTATTGAAGTGGACAACAATGTGCGCGAGGATCGTGCTCTCTT                         GAATGGTGCACAAAAGCTACTGGGCATCCTGATAGCTGTTGGTGAAGCTGT
genomic: TCAAAAATTATTGAAGTGGACAACAATGTGCGCGAGGATCGCGCTCTCTTgtaagtatcc ... ttcctctcagGAATGGTGCACAAAAACTACTGGGCATCCTGATAGCTGTTGGTGAAGCTGT
EST: gi|351019056|gb|FQ426555.1|FQ426555
EST:     TCAAAAATTATTGAAGTGGACAACAATGTGCGCGAGGATCGCGCTCTCTT                         GAATGGTGCACAAAAACTACTGGGCATCCTGATAGCTGTTGGTGAAGCTGT
genomic: TCAAAAATTATTGAAGTGGACAACAATGTGCGCGAGGATCGCGCTCTCTTgtaagtatcc ... ttcctctcagGAATGGTGCACAAAAACTACTGGGCATCCTGATAGCTGTTGGTGAAGCTGT
EST: gi|351057111|gb|FQ450818.1|FQ450818
EST:     TCAAAGATTACTGAAGTGGACAACAATGTGCGCGAGGATCGTGCTCTCTT                         GAATGGTGCGCAAAAGCTACTGGGCATCCTGATAGCTGTTGGTGAAGCTGT
genomic: TCAAAAATTATTGAAGTGGACAACAATGTGCGCGAGGATCGCGCTCTCTTgtaagtatcc ... ttcctctcagGAATGGTGCACAAAAACTACTGGGCATCCTGATAGCTGTTGGTGAAGCTGT
EST: gi|161707716|gb|FC057430.1|FC057430
EST:     TCAAAAATTATTGAAGTGGACAACAATGTGCGCGAGGATCGCGCTCTCTT                         GAATGGTGCACAAAAACTACTGGGCATCCTGATAGCTGTTGGTGAAGCTGT
genomic: TCAAAAATTATTGAAGTGGACAACAATGTGCGCGAGGATCGCGCTCTCTTgtaagtatcc ... ttcctctcagGAATGGTGCACAAAAACTACTGGGCATCCTGATAGCTGTTGGTGAAGCTGT
EST: gi|110692118|gb|EE070996.1|EE070996
EST:     TCAAAAATTATTGAAGTGGACAACAATGTGCGCGAGGATCGCGCTCTCTT                         GAATGGTGCACAAAAACTACTGGGCATCCTGATAGCTGTTGGTGAAGCTGT
genomic: TCAAAAATTATTGAAGTGGACAACAATGTGCGCGAGGATCGCGCTCTCTTgtaagtatcc ... ttcctctcagGAATGGTGCACAAAAACTACTGGGCATCCTGATAGCTGTTGGTGAAGCTGT
EST: gi|351053628|gb|FQ440137.1|FQ440137
EST:     TCAAAAATTATTGAAGTGGACAACAATGTGCGCGAGGATCGCGCTCTCTT                         GAATGGTGCACAAAAACTACTGGGCATCCTGATAGCTGTTGGTGAAGCTGT
genomic: TCAAAAATTATTGAAGTGGACAACAATGTGCGCGAGGATCGCGCTCTCTTgtaagtatcc ... ttcctctcagGAATGGTGCACAAAAACTACTGGGCATCCTGATAGCTGTTGGTGAAGCTGT
EST: gi|351015992|gb|FQ431947.1|FQ431947
EST:     TCAAAAATTATTGAAGTGGACAACAATGTGCGCGAGGATCGCGCTCTCTT                         GAATGGTGCACAAAAACTACTGGGCATCCTGATAGCTGTTGGTGAAGCTGT
genomic: TCAAAAATTATTGAAGTGGACAACAATGTGCGCGAGGATCGCGCTCTCTTgtaagtatcc ... ttcctctcagGAATGGTGCACAAAAACTACTGGGCATCCTGATAGCTGTTGGTGAAGCTGT
EST: gi|110687041|gb|EE064103.1|EE064103
EST:     TCAAAGATTATTGAAGTGGACAACAATGTGCGCGAGGATCGTGCTCTCTT                         GAATGGTGCACAAAAGCTACTGGGCATCCTGATAGCTGTTGGTGAAGCTGT
genomic: TCAAAAATTATTGAAGTGGACAACAATGTGCGCGAGGATCGCGCTCTCTTgtaagtatcc ... ttcctctcagGAATGGTGCACAAAAACTACTGGGCATCCTGATAGCTGTTGGTGAAGCTGT
EST: gi|351017096|gb|FQ424523.1|FQ424523
EST:     TCAAAGATTATTGAAGTGGACAACAATGTGCGCGAGGATCGTGCTCTCTT                         GAATGGTGCACAAAAGCTACTGGGCATCCTGATAGCTGTTGGTGAAGCTGT
genomic: TCAAAAATTATTGAAGTGGACAACAATGTGCGCGAGGATCGCGCTCTCTTgtaagtatcc ... ttcctctcagGAATGGTGCACAAAAACTACTGGGCATCCTGATAGCTGTTGGTGAAGCTGT
EST: gi|110409186|gb|EC974845.1|EC974845
EST:     TCAAAGATTATTGAAGTGGACAACAATGTGCGCGAGGATCGTGCTCTCTT                         GAATGGTGCACAAAAGCTACTGGGCATCCTGATAGCTGTTGGTGAAGCTGT
genomic: TCAAAAATTATTGAAGTGGACAACAATGTGCGCGAGGATCGCGCTCTCTTgtaagtatcc ... ttcctctcagGAATGGTGCACAAAAACTACTGGGCATCCTGATAGCTGTTGGTGAAGCTGT
EST: gi|352791461|gb|FQ481040.1|FQ481040
EST:     TCAAAGATTATTGAAGTGGACAACAATGTGCGCGAGGATCGTGCTCTCTT                         GAATGGTGCGCAAAAGCTACTGGGCATCCTGATAGCTGTTGGTGAAGCTGT
genomic: TCAAAAATTATTGAAGTGGACAACAATGTGCGCGAGGATCGCGCTCTCTTgtaagtatcc ... ttcctctcagGAATGGTGCACAAAAACTACTGGGCATCCTGATAGCTGTTGGTGAAGCTGT
EST: gi|110365093|gb|EC928838.1|EC928838
EST:     TCAAAAATTATTGAAGTGGACAACAATGTGCGCGAGGATCGCGCTCTCTT                         GAATGGTGCACAAAAACTACTGGGCATCCTGATAGCTGTTGGTGAAGCTGT
genomic: TCAAAAATTATTGAAGTGGACAACAATGTGCGCGAGGATCGCGCTCTCTTgtaagtatcc ... ttcctctcagGAATGGTGCACAAAAACTACTGGGCATCCTGATAGCTGTTGGTGAAGCTGT
EST: gi|110698349|gb|EE075761.1|EE075761
EST:     TCAAAAATTATTGAAGTGGACAACAATGTGCGCGAGGATCGCGCTCTCTT                         GAATGGTGCACAAAAACTACTGGGCATCCTGATAGCTGTTGGTGAAGCTGT
genomic: TCAAAAATTATTGAAGTGGACAACAATGTGCGCGAGGATCGCGCTCTCTTgtaagtatcc ... ttcctctcagGAATGGTGCACAAAAACTACTGGGCATCCTGATAGCTGTTGGTGAAGCTGT
EST: gi|33403746|gb|CF209373.1|CF209373
EST:     ATTGAAGTGGACAACAATGTGCGCGAGGATCGCGCTCTCTT                         GAATGGTGCACAAAAACTACTGGGCATCCTGATAGCTGTTGGTGAAGCTGT
genomic: ATTGAAGTGGACAACAATGTGCGCGAGGATCGCGCTCTCTTgtaagtatcc ... ttcctctcagGAATGGTGCACAAAAACTACTGGGCATCCTGATAGCTGTTGGTGAAGCTGT
EST: gi|351055337|gb|FQ441935.1|FQ441935
EST:     TCAAAAATTATTGAAGTGGACAACAATGTGCGCGAGGATCGCGCTCTCTT                         GAATGGTGCACAAAAACTACTGGGCATCCTGATAGCTGTTGGTGAAGCTGT
genomic: TCAAAAATTATTGAAGTGGACAACAATGTGCGCGAGGATCGCGCTCTCTTgtaagtatcc ... ttcctctcagGAATGGTGCACAAAAACTACTGGGCATCCTGATAGCTGTTGGTGAAGCTGT
EST: gi|161720666|gb|FC070610.1|FC070610
EST:     ATCGCGCTCTCTT                         GAATGGTGCACAAAAACTACTGGGCATCCTGATAGCTGTTGGTGAAGCTGT
genomic: ATCGCGCTCTCTTgtaagtatcc ... ttcctctcagGAATGGTGCACAAAAACTACTGGGCATCCTGATAGCTGTTGGTGAAGCTGT
EST: gi|351025109|gb|FQ433526.1|FQ433526
EST:     TCAAAAATTATTGAAGTGGACAACAATGTGCGCGAGGATCGCGCTCTCTT                         GAATGGTGCACAAAAACTACTGGGCATCCTGATAGTTGTTGGTGAAGCTGT
genomic: TCAAAAATTATTGAAGTGGACAACAATGTGCGCGAGGATCGCGCTCTCTTgtaagtatcc ... ttcctctcagGAATGGTGCACAAAAACTACTGGGCATCCTGATAGCTGTTGGTGAAGCTGT
EST: gi|37183757|gb|CF603111.1|CF603111
EST:     TCAAAAATTATTGAAGTGGACAACAATGTGCGCGAGGATCGCGCTCTCTT                         GAATGGTGCACAAAAACTACTGNGCATCCTGATAGCTGTTGG
genomic: TCAAAAATTATTGAAGTGGACAACAATGTGCGCGAGGATCGCGCTCTCTTgtaagtatcc ... ttcctctcagGAATGGTGCACAAAAACTACTGGGCATCCTGATAGCTGTTGG
EST: gi|161721208|gb|FC070714.1|FC070714
EST:     ACAAAAATTATTGAAGTGGACAACAATGTGCGCGAGGATCGCGCTCTCTT                         GAATGGTGCACAAAAACTACTGGGCATCCTGATAGCTGTTGGTGAAACTGT
genomic: TCAAAAATTATTGAAGTGGACAACAATGTGCGCGAGGATCGCGCTCTCTTgtaagtatcc ... ttcctctcagGAATGGTGCACAAAAACTACTGGGCATCCTGATAGCTGTTGGTGAAGCTGT
EST: gi|352789802|gb|FQ478617.1|FQ478617
EST:     TCAAAGATTATTGAAGTGGACAACAATGTGCGCGAGGATCGTGCTCTCTT                         GAATGGTGCGCAAAAGCTACTGGGCATCCTGATAGCTGTTGGTGAAGCTGT
genomic: TCAAAAATTATTGAAGTGGACAACAATGTGCGCGAGGATCGCGCTCTCTTgtaagtatcc ... ttcctctcagGAATGGTGCACAAAAACTACTGGGCATCCTGATAGCTGTTGGTGAAGCTGT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGATCACCCCAATTGTGACTTCTGGACTGGTGATGCAACTCTTGGCCGGGTCAAAAATTATTGAAGTGGACAACAATGTGCGCGAGGATCGCGCTCTCTTgtaagtatcctttaggctaagttctatttgggtttttggtcagatgtgatacatttcatgtactatctgtgatctagagatattattctcactgctacat

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -agagata