Sequence
atgc intronic sequence ATGC exonic sequenceTATTCTAAGCCCAAATGAAAGTGAACTTGCACGACTAACCAGAATGCCAACTGAAAGTTTTGAACAGATTAGCCAAGCTGTGGCAAAATGTCATGAAATGgtgagttcttatacatcctaacaatcttgattcttccaaggctgtatgccttaacccgagtttgtattattatataatggttcttttgggctacttgtgg...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv19s0014g00180.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA13G33840.1 (Glycine max), 5'ss of exon 2
TATTCTAAGCCCAAATGAAAGTGAACTTGCACGACTAACCAGAATGCCAACTGAAAGTTTTGAACAGATTAGCCAAGCTGTGGCAAAATGTCATGAAATGgtgagttcttata--catcctaacaatcttgattcttccaaggctgtatgcctta--acccgagt-ttgtattattatataatggttcttttgggctacttgtgg
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TATTCTGAGTCCTAATGAAACTGAACTTGCTCGCCTTACCGGAATGCCAACAGAAAGTTTTGAAGAGATTGCACAGGCTGCTTTGAAATGCCATGAATTGgtcagttcaagtaatgactttaggggtcacaatgaaat-gattctgcacacttttctacttgaatgccatattcattgcttatggatagacaaggtt-ttag---
upper sequence: Vv19s0014g00180.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA13G33850.1 (Glycine max), 5'ss of exon 2
TATTCTAAGCCCAAATGAAAGTGAACTTGCACGACTAACCAGAATGCCAACTGAAAGTTTTGAACAGATTAGCCAAGCTGTGGCAAAATGTCATGAAATGgtgagttcttatacatcctaacaatcttgattcttccaaggctgtatgccttaacccgagtttgtattattatataatggttcttttgggctacttgtgg--
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TATTTTGAGTCCTAATGAAACTGAACTTGCACGCCTTACGGGAATGCCAACAGAAAGTTTTGAAGAGATTCAACAGGCTGCTTTGAAATGCCATGAAATGgtgagttttattagtaacctttgtgactgatgttgccacaattgca-gccgcgttgtggtcttggag-atcccaaaaaaactttgacgtttcagccgaaatt
upper sequence: Vv19s0014g00180.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: AT1G17160.2 (Arabidopsis thaliana), 5'ss of exon 2
TATTCTAAGCCCAAATGAAAGTGAACTTGCACGACTAACCAGAATGCCAACTGAAAGTTTTGAACAGATTAGCCAAGCTGTGGCAAAATGTCATGAAATGgtgagttcttat---acatcctaacaatcttgattctt--ccaaggctgtatgcc-ttaacccgagtttgtattattatataatggttctt----ttgggctacttgtgg---------------
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TATCTTGAGCCCCAATGAAACTGAGCTCAGTCGCTTGACAGGAATGCCAACTGAAACTTTTGAACAGATTAGCCAAGCTGTTGCAAAGTGCCATAAGTTGgtaagtccctttcttgcacattattaactccaaattttggctaatccttgctgctactggactctttgaaaatgctggtttagtggcttttgggtttaaaaggtttaaggctatgttttcctcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|122689106|gb|EC932578.1|EC932578EST: CTGAAAGTTTTGAACAGATTAGCCAAGCTGTGGCAAAATGTCATGAAATG GGTGTTAAAGAAGTCCTGGCGAAACTGGGGGAGAAGGGGTCAGCTTTGTTT
genomic: CTGAAAGTTTTGAACAGATTAGCCAAGCTGTGGCAAAATGTCATGAAATGgtgagttctt ... tatattttagGGTGTTAAAGAAGTCCTGGTGAAACTGGGGGAGAAGGGGTCAGCTTTGTTT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TATTCTAAGCCCAAATGAAAGTGAACTTGCACGACTAACCAGAATGCCAACTGAAAGTTTTGAACAGATTAGCCAAGCTGTGGCAAAATGTCATGAAATGgtgagttcttatacatcctaacaatcttgattcttccaaggctgtatgccttaacccgagtttgtattattatataatggttcttttgggctacttgtgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG