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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGACCCAAACAATGTCCTACAGAGTTGGGATCCGACCCTTGTCAACCCCTGCACATGGTTTCATGTTACCTGCAATAGTGATAATAGTGTTATAAGAGTgtaagcagctttcccttcatacgtcttccatttactggctcagtgtaacttgtgaattgcttgatccatgaaacgccctgtatgatgttgctttccatatattttcacag

Basic information

species Vitis vinifera
transcript Vv18s0164g00070.t01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv18s0164g00070.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: LOC_Os08g07760.1 (Oryza sativa), 5'ss of exon 2
AGGACCCAAACAATGTCCTACAGAGTTGGGATCCGACCCTTGTCAACCCCTGCACATGGTTTCATGTTACCTGCAATAGTGATAATAGTGTTATAAGAGTgtaagcagctttcccttcatacgtcttccatttactggctca---gtgtaacttgtgaattgcttgatccatgaaacgccctgtatgatgttgctttccatatattttcacag
  || || || ||||| ||||| |||||||| || || || ||||| || ||||| |||||||||||||| |||||||  || || |||||||| |||||||| |     | || ||  |      | || |    | ||||    | |   |||  | |  ||  ||   | |                                       
TTGATCCTAATAATGTTCTACAAAGTTGGGACCCAACTCTGGTCAATCCGTGCACTTGGTTTCATGTTACTTGCAATAACGACAACAGTGTTATCAGAGTgtacgtg--ctaccttttgtctactatgcaatccacgcctcatacatttttattgaaattatctccatttttcag--------------------------------------

upper sequence: Vv18s0164g00070.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: LOC_Os04g38480.1 (Oryza sativa), 5'ss of exon 2
AGGACCCAAACAATGTCCTACAGAGTTGGGATCCGACCCTTGTCAACCCCTGCACATGGTTTCATGTTACCTGCAATAGTGATAATAGTGTTATAAGAGTgtaagcagctttcccttcatacgtcttccatttactggctcagtgtaacttgtgaattgcttgatccatgaaacgccctgtatgatgttgctttccatatattttcacag
| ||  | |||||||| || |||||||||||||| || || ||||| || ||||||||||| ||||| || || ||   ||| || || || || ||||||||||          || | |    |  |||||   ||||  ||  ||  |  ||| ||  ||||| ||     |   ||  ||||  |  |||||      |||| |||
AAGATGCTAACAATGTGCTGCAGAGTTGGGATCCCACTCTGGTCAATCCATGCACATGGTTCCATGTAACTTGTAACCCTGACAACAGCGTGATCAGAGTgtaagt-------ttttgacagaattatcatttttaggctt-gtcaaaagtaagaaatg--tgatc-attttgtgtgttgactgat-ctattttcc------tttcgcag

upper sequence: Vv18s0164g00070.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GRMZM2G384439_T02 (Zea mays), 5'ss of exon 2
AGGACCCAAACAATGTCCTACAGAGTTGGGATCCGACCCTTGTCAACCCCTGCACATGGTTTCATGTTACCTGCAATAGTGATAATAGTGTTATAAGAGTgtaag--cagctttcccttcatacgtcttccatttactggctcagtgtaacttgtgaattgcttgatccatgaaacgccctgtatgatgttgctttccatatattttcacag
| || || || ||||| ||||| ||||||||||| || || |||||||||||||| |||||||||||||||||||||| ||| || |||||||| |||||||| |  || |||| ||| ||    | || |||      | |     ||   ||||  || | |  |  | |     ||   | ||  |                       
ATGATCCTAATAATGTTCTACAAAGTTGGGATCCCACTCTGGTCAACCCCTGCACTTGGTTTCATGTTACCTGCAATAATGACAACAGTGTTATCAGAGTgtaggttcaccttttcctccac-tatatttcatcagtgagttgcacatattctgtg--tttcgtactgaaagtttttcctcatttgcag-----------------------

upper sequence: Vv18s0164g00070.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GRMZM2G115420_T01 (Zea mays), 5'ss of exon 2
AGGACCCAAACAATGTCCTACAGAGTTGGGATCCGACCCTTGTCAACCCCTGCACATGGTTTCATGTTACCTGCAATAGTGATAATAGTGTTATAAGAGTgtaagcagctttcccttcatacgtcttccatttactggctcagtgtaacttgtgaattgcttgatccatgaaacgccctgtatgatgttgctttccatatattttcacag
| ||  | ||||||||| | |||||||||||||| || ||||| || || || |||||||| |||||||| || || |  ||||| |||||||| ||||||||||  | |        | |   ||  ||| || | |     |  ||  ||| |||    || ||    |   |  ||   || |    | || || |           
AAGATGCTAACAATGTCTTGCAGAGTTGGGATCCCACTCTTGTTAATCCATGTACATGGTTCCATGTTACGTGTAACAACGATAACAGTGTTATCAGAGTgtaagttgatga------aaaaagctctcatatattcgt---atcaaaagtgttaatga--tgttctcctactggttctaagtg-taccccctttcacag----------

upper sequence: Vv18s0164g00070.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GRMZM2G150024_T03 (Zea mays), 5'ss of exon 2
AGGACCCAAACAATGTCCTACAGAGTTGGGATCCGACCCTTGTCAACCCCTGCACATGGTTTCATGTTACCTGCAATAGTGATAATAGTGTTATAAGAGTgtaagcagctttcccttcatacgtcttccatttactggctcagtgtaacttgtgaattgcttgatccatgaaacgccctgtatgatgttgctttccatatattttcacag
  ||  | ||||||||| | |||||||||||| | || ||||| || || || ||||||||||| ||||| || || || ||||| |||||||| ||||||||||  | |        | |   ||  ||| || |   |         | ||||  | ||   ||        |  ||  |||      ||||| | |           
TAGATACGAACAATGTCTTGCAGAGTTGGGATTCCACTCTTGTTAATCCATGTACATGGTTTCACGTTACGTGTAACAGCGATAACAGTGTTATCAGAGTgtaagtcgatg-------aaaaagctctcatatattcatttcaaagtgttagtgatgttctccttctg------gttctaaatgtccccactttc-acag----------

upper sequence: Vv18s0164g00070.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA10G36280.1 (Glycine max), 5'ss of exon 2
AGGACCCAAACAATGTCCTACAGAGTTGGGATCCGACCCTTGTCAACCCCTGCACATGGTTTCATGTTACCTGCAATAGTGATAATAGTGTTATAAGAGTgtaagcagctt-tcccttcatacgtcttccat----ttactggctcagtgtaacttgtgaattgct--tgatccatgaaacgccc-tgtatgatgttgctttccatatattttcacag
|||| || ||||||||  | || ||||||||||| || |||||||| ||||| |||||||||||||| || ||||| | |||||||||||| |||||||||||||  |||| | |||  |||  | |  | |    || ||| || |        | | ||| |    |||    |  || |     || |||| ||   ||   |   || |||   
AGGATCCCAACAATGTTTTGCAAAGTTGGGATCCTACACTTGTCAATCCCTGTACATGGTTTCATGTGACATGCAACAATGATAATAGTGTCATAAGAGTgtaagttgcttgttcctggatatctgtcacgtgttctttctgcctgaacagcttcttttaatcgaggatgacttctctaatgtttgcgtgtgatctttactttgctcggttgtcag--

upper sequence: Vv18s0164g00070.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA02G08360.1 (Glycine max), 5'ss of exon 1
AGGACCCAAACAATGTCCTACAGAGTTGGGATCCGACCCTTGTCAACCCCTGCACATGGTTTCATGTTACCTGCAATAGTGATAATAGTGTTATAAGAGTgtaagcagctt-tcccttcatacgtcttccatttactggctcagtgtaacttgtgaattgcttgatccatgaaacgccctgtatgatgttgctttccatatattttcacag---
|||| || ||||||||  | || |||||||| || || || ||||| || ||||||||||||||||| || ||||| | |||||||||||| |||||||||||||| || | ||| || | |  | |   ||||| |  |    ||||   | |  |  ||||  |        |  | | | | ||||    || | | |  ||| | |    
AGGATCCTAACAATGTTTTGCAAAGTTGGGACCCTACACTGGTCAATCCATGCACATGGTTTCATGTAACATGCAACAATGATAATAGTGTCATAAGAGTgtaagctgcatgtcctttgagatctgtcatatttattttcgttctgta---tttatacagcttagtttcatcttcttcttttttaatgtgttctttcctttggtttaatatcag

upper sequence: Vv18s0164g00070.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA20G31320.1 (Glycine max), 5'ss of exon 2
AGGACCCAAACAATGTCCTACAGAGTTGGGATCCGACCCTTGTCAACCCCTGCACATGGTTTCATGTTACCTGCAATAGTGATAATAGTGTTATAAGAGTgtaagcagctt-tcccttcatacgtcttccatttac----tggctcagtgtaacttgtgaattgct--tgatccatgaaacgccc-tgtatgatgttgctttccatatattttcacag
|||| || ||||||||  | || ||||||||||| || ||||| || || || |||||||||||||| || ||||| | |||||||||||| |||||||||||||  |||| | |||| |||  | |  ||| | |    || || |  |     | | |||||    |||    |  ||||      | |||| ||   ||   |   || |||   
AGGATCCCAACAATGTTTTGCAAAGTTGGGATCCTACACTTGTTAATCCATGTACATGGTTTCATGTAACATGCAACAATGATAATAGTGTCATAAGAGTgtaagttgcttgttccttgatatctgtcacatgttcattctgtctgaacggcttcttttaattgaggatgacttctctaacgtttgcttgtgatctttactttgcttggttgtcag--

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71873068|gb|DT022123.1|DT022123
EST:     TGCACATGGTTTCATGTTACCTGCAATAGTGATAATAGTGTTATAAGAGT                         TGATCTTGGAAATGCTGCTTTGTCGGGTCAACTGGTACCACAGCTTGGCCT
genomic: TGCACATGGTTTCATGTTACCTGCAATAGTGATAATAGTGTTATAAGAGTgtaagcagct ... attttcacagTGATCTTGGAAATGCTGCTTTGTCGGGTCAACTGGTACCACAGCTTGGCCT