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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTCTTTTTCTTGCTATCTGTCGCATTTTATGCCTTTTTTGCTCCCTTCCTTGGGAAGGATATCTATGAATATGTGGCAATCAGTGTTTATTCTTTCTTGgtaaatacacttgggccttagttttcttattaactttttcaaagtttctcttttatctgccttatttattattgttcaaatttctactttcag

Basic information

species Vitis vinifera
transcript Vv18s0122g00920.t01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv18s0122g00920.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA06G01810.1 (Glycine max), 5'ss of exon 2
AGTCTTTTTCTTGCTATCTGTCGCATTTTATGCCTTTTTTGCTCCCTTCCTTGGGAAGGATATCTATGAATATGTGGCAATCAGTGTTTATTCTTTCTTGgtaaata-cacttgggccttagttttcttattaactttttcaaagtttctctttt-----atctgccttatttattattgttcaa-atttctactttcag------------------------
 || ||||||||||||||| | |||| |||||| || |||||||| || || || ||||| ||||||||||||||||| ||  ||||||| ||| | |||||||  |  |||  |    |  | | ||      |   |     |||| || |       ||  |   ||   | |    ||||| ||| || | || |                         
TGTATTTTTCTTGCTATCTATAGCATATTATGCTTTCTTTGCTCCTTTTCTGGGAAAGGACATCTATGAATATGTGGCTATTGGTGTTTACTCTGTATTGgtaagcagtactctgattcttctctgctccccctccgctcatgtgtttttcatacggaagattcgttctaaaaaatgggattcaatattccttcattgacttcaacttaaatgttgaactgcag

upper sequence: Vv18s0122g00920.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA04G01720.1 (Glycine max), 5'ss of exon 2
AGTCTTTTTCTTGCTATCTGTCGCATTTTATGCCTTTTTTGCTCCCTTCCTTGGGAAGGATATCTATGAATATGTGGCAATCAGTGTTTATTCTTTCTTGgtaaata-cacttgggccttagttttcttattaactttttcaaagtt----tctcttttatctgccttatttattattgttcaa---atttctactttcag------------
||| ||||||||||||||| | |||| |||||| || |||||||| || ||||| ||||| |||||||||||| |||| ||  ||||||| ||| | |||||||     |||  |    |  | | || ||    ||||||| | |     |   || || |      ||| | ||||  |  |   | ||  ||||  |             
AGTATTTTTCTTGCTATCTATAGCATATTATGCTTTCTTTGCTCCTTTTCTTGGAAAGGACATCTATGAATATTTGGCTATTGGTGTTTACTCTGTATTGgtaagcggtactctgattcttctctgctcatgtgttttttcatactgcagattcgttctaacaatgggattcaatattccttcattgacttgaacttaaatgttgaactgcag