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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAATGAAAGTTTTCCGGGGCCGGTGATTCGTGTTCGCAAGGGAGATACTATTTACGTTAATATTCATAACCAAGGATCCTATGGTGTCACCATTCACTGgtactctttctctctcccgtgtgtctactttaaaaatggtttcaggtagagaagtttcgagaatttcactattttccttatggttgataaaatataaaaa...

Basic information

species Vitis vinifera
transcript Vv18s0122g00250.t01
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|349824009|gb|FQ417396.1|FQ417396
EST:     ATTTACGTTAATATTCATAACCAAGGATCCTATGGTGTCACCATTCACTG                         GCATGGAGTGAAGAACCCAAGAAATCCATGGGGAGATGGGCCTGAGTACAT
genomic: ATTTACGTTAATATTCATAACCAAGGATCCTATGGTGTCACCATTCACTGgtactctttc ... atggctacagGCATGGAGTGAAGAACCCAAGAAATCCATGGGGAGATGGGCCTGAGTACAT
EST: gi|351040157|gb|FQ425243.1|FQ425243
EST:     ATTTACGTTAATATTCATAACCAAGGATCCTATGGTGTCACCATTCACTG                         GCATGGAGTGAAGAACCCAAGAAATCCATGGGGAGATGGGCCTGAGTACAT
genomic: ATTTACGTTAATATTCATAACCAAGGATCCTATGGTGTCACCATTCACTGgtactctttc ... atggctacagGCATGGAGTGAAGAACCCAAGAAATCCATGGGGAGATGGGCCTGAGTACAT
EST: gi|110383383|gb|EC947754.1|EC947754
EST:     ATTTACGTTAATATTCATAACCAAGGATCCTATGGTGTCACCATTCACTG                         GCATGGAGTGAAGAACCCAAGAAATCCATGGGGAGATGGGCCTGAGTACAT
genomic: ATTTACGTTAATATTCATAACCAAGGATCCTATGGTGTCACCATTCACTGgtactctttc ... atggctacagGCATGGAGTGAAGAACCCAAGAAATCCATGGGGAGATGGGCCTGAGTACAT
EST: gi|351014965|gb|FQ444254.1|FQ444254
EST:     ATTTACGTTAATATTCATAACCAAGGATCCTATGGTGTCACCATTCACTG                         GCATGGAGTGAAGAACCCAAGAAATCCATGGGGAGATGGGCCTGAGTACAT
genomic: ATTTACGTTAATATTCATAACCAAGGATCCTATGGTGTCACCATTCACTGgtactctttc ... atggctacagGCATGGAGTGAAGAACCCAAGAAATCCATGGGGAGATGGGCCTGAGTACAT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGAATGAAAGTTTTCCGGGGCCGGTGATTCGTGTTCGCAAGGGAGATACTATTTACGTTAATATTCATAACCAAGGATCCTATGGTGTCACCATTCACTGgtactctttctctctcccgtgtgtctactttaaaaatggtttcaggtagagaagtttcgagaatttcactattttccttatggttgataaaatataaaaa

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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -agagaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gataaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tataaaa