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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAGATTTTCATTGGAGGATTGGCGAAGGATACAACCTACGgtgagtttaatattgctgccggatgatttcctgtatttatgccccttttattgtggatcagttgtttccaaagtttccctggaaaaagaaaaggaaaaat...

Basic information

species Vitis vinifera
transcript Vv18s0117g00150.t01
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33407717|gb|CF213344.1|CF213344
EST:     GAAGATTTTCATTGGAGGATTGGCGAAGGATACAACCAACG                         CTGCCTTCAATAAGCACTTTGAGAAATATGGAGAAATAACAGACTCGGTGA
genomic: GAAGATTTTCATTGGAGGATTGGCGAAGGATACAACCTACGgtgagtttaa ... tttattgcagCTGCCTTCAATAAGCACTTTGAGAAATATGGAGAAATAACAGACTCGGTGA
EST: gi|110712411|gb|EE090004.1|EE090004
EST:     GAAGATTTTCATTGGAGGATTGGCGAAGGATACAACCTACG                         CTGCCTTCAATAAGCACTTTGAGAAATATGGAGAAATAACAGACTCGGTGA
genomic: GAAGATTTTCATTGGAGGATTGGCGAAGGATACAACCTACGgtgagtttaa ... tttattgcagCTGCCTTCAATAAGCACTTTGAGAAATATGGAGAAATAACAGACTCGGTGA
EST: gi|161711381|gb|FC059938.1|FC059938
EST:     GAAGATTTTCATTGGAGGATTGGCGAAGGATACAACCTACG                         CTGCCTTCAATAAGCACTTTGAGAAATATGGAGAAATAACAGACTCGGTGA
genomic: GAAGATTTTCATTGGAGGATTGGCGAAGGATACAACCTACGgtgagtttaa ... tttattgcagCTGCCTTCAATAAGCACTTTGAGAAATATGGAGAAATAACAGACTCGGTGA
EST: gi|110719186|gb|EE096875.1|EE096875
EST:     GAAGATTTTCATTGGAGGATTGGCGAAGGATACGACCTACG                         CTGCCTTCAATAAGCACTTTGAGAAATATGGAGAAATAACAGACTCGGTGA
genomic: GAAGATTTTCATTGGAGGATTGGCGAAGGATACAACCTACGgtgagtttaa ... tttattgcagCTGCCTTCAATAAGCACTTTGAGAAATATGGAGAAATAACAGACTCGGTGA
EST: gi|71873142|gb|DT022197.1|DT022197
EST:     GAAGATTTTCATTGGAGGATTGGCGAAGGATACAACCTACG                         CTGCCTTCAATAAGCACTTTGAGAAATATGGAGAAATAACAGACTCGGTGA
genomic: GAAGATTTTCATTGGAGGATTGGCGAAGGATACAACCTACGgtgagtttaa ... tttattgcagCTGCCTTCAATAAGCACTTTGAGAAATATGGAGAAATAACAGACTCGGTGA
EST: gi|161721778|gb|FC071127.1|FC071127
EST:     GAAGATTTTCATTGGAGGATTGGCGAAGGATACAACCTACG                         CTGCCTTCAATAAGCACTTTGAGAAATATGGAGAAATAACAGACTCGGTGA
genomic: GAAGATTTTCATTGGAGGATTGGCGAAGGATACAACCTACGgtgagtttaa ... tttattgcagCTGCCTTCAATAAGCACTTTGAGAAATATGGAGAAATAACAGACTCGGTGA
EST: gi|161706369|gb|FC055475.1|FC055475
EST:     GAAGATTTTCATTGGAGGATTGGCGAAGGATACAACCTACG                         CTGCCTTCAATAAGCACTTTGAGAAATATGGAGAAATAACAGACTCGGTGA
genomic: GAAGATTTTCATTGGAGGATTGGCGAAGGATACAACCTACGgtgagtttaa ... tttattgcagCTGCCTTCAATAAGCACTTTGAGAAATATGGAGAAATAACAGACTCGGTGA
EST: gi|37188093|gb|CF607444.1|CF607444
EST:     GAAGATTTTCATTGGAGGATTGGCGAAGGATACAACCTACG                         CTGCCTTCAATAAGCACTTTGAGAAATATGGAGAAATAACAGACTCGGTGA
genomic: GAAGATTTTCATTGGAGGATTGGCGAAGGATACAACCTACGgtgagtttaa ... tttattgcagCTGCCTTCAATAAGCACTTTGAGAAATATGGAGAAATAACAGACTCGGTGA
EST: gi|351030617|gb|FQ437043.1|FQ437043
EST:     GAAGATTTTCATTGGAGGATTGGCGAAGGATACAACCTACG                         CTGCCTTCAATAAGCACTTTGAGAAATATGGAGAAATAACAGACTCGGTGA
genomic: GAAGATTTTCATTGGAGGATTGGCGAAGGATACAACCTACGgtgagtttaa ... tttattgcagCTGCCTTCAATAAGCACTTTGAGAAATATGGAGAAATAACAGACTCGGTGA
EST: gi|351027170|gb|FQ440038.1|FQ440038
EST:     GAAGATTTTCATTGGAGGATTGGCGAAGGATACAACCTACG                         CTGCCTTCAATAAGCACTTTGAGAAATATGGAGAAATAACAGACTCGGTGA
genomic: GAAGATTTTCATTGGAGGATTGGCGAAGGATACAACCTACGgtgagtttaa ... tttattgcagCTGCCTTCAATAAGCACTTTGAGAAATATGGAGAAATAACAGACTCGGTGA
EST: gi|110710940|gb|EE087573.1|EE087573
EST:     GAAGATTTTCATTGGAGGATTGGCGAAGGATACGACCTACG                         CTGCCTTCAATAAGCACTTTGAGAAATATGGAGAAATAACAGACTCGGTGA
genomic: GAAGATTTTCATTGGAGGATTGGCGAAGGATACAACCTACGgtgagtttaa ... tttattgcagCTGCCTTCAATAAGCACTTTGAGAAATATGGAGAAATAACAGACTCGGTGA
EST: gi|351014903|gb|FQ438103.1|FQ438103
EST:     GAAGATTTTCATTGGAGGATTGGCGAAGGATACAACCTACG                         CTGCCTTCAATAAGCACTTTGAGAAATATGGAGAAATAACAGACTCGGTGA
genomic: GAAGATTTTCATTGGAGGATTGGCGAAGGATACAACCTACGgtgagtttaa ... tttattgcagCTGCCTTCAATAAGCACTTTGAGAAATATGGAGAAATAACAGACTCGGTGA
EST: gi|351039455|gb|FQ461322.1|FQ461322
EST:     GAAGATTTTCATTGGAGGATTGGCGAAGGATACAACCTACG                         CTGCCTTCAATAAGCACTTTGAGAAATATGGAGAAATAACAGACTCGGTGA
genomic: GAAGATTTTCATTGGAGGATTGGCGAAGGATACAACCTACGgtgagtttaa ... tttattgcagCTGCCTTCAATAAGCACTTTGAGAAATATGGAGAAATAACAGACTCGGTGA
EST: gi|110707058|gb|EE083127.1|EE083127
EST:     GAAGATTTTCATTGGAGGATTGGCGAAGGATACAACCTACG                         CTGCCTTCAATAAGCACTTTGAGAAATATGGAGAAATAACAGACTCGGTGA
genomic: GAAGATTTTCATTGGAGGATTGGCGAAGGATACAACCTACGgtgagtttaa ... tttattgcagCTGCCTTCAATAAGCACTTTGAGAAATATGGAGAAATAACAGACTCGGTGA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GAAGATTTTCATTGGAGGATTGGCGAAGGATACAACCTACGgtgagtttaatattgctgccggatgatttcctgtatttatgccccttttattgtggatcagttgtttccaaagtttccctggaaaaagaaaaggaaaaat

- - - - -  TTGGAG
- - - - - - TGGAGG
- - - - - -  GGAGGA
- - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctggaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aagaaaa