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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTGGCTGAAAGTCAGACTGTTTATGCCATTGACCTTCTTGGTTTTGGTGCATCTGATAAGCCATCAGGCTTTGCATATACAATGGAAATATGGGCTCAGgtatatctttggccaaacttgaagttgcattttgtcctatacatgtgcaattgatgccttgacattgcagatcttcactactgagacactgagttattctacag

Basic information

species Vitis vinifera
transcript Vv18s0089g01420.t01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv18s0089g01420.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA20G35660.1 (Glycine max), 5'ss of exon 2
ACTGGCTGAAAGTCAGACTGTTTATGCCATTGACCTTCTTGGTTTTGGTGCATCTGATAAGCCATCAGGCTTTGCATATACAATGGAAATATGGGCTCAGgtatatctttggccaaacttgaagttgcattttgtcctatacatgtgcaattgatgccttgacattgcagatcttca----ctactgagacactg-agttattctacag--
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ACTGGCCCAGAATTATACTGTTTATGCTATTGATCTTCTTGGTTTTGGGGCTTCAGATAAGCCTCCAGGCTTTCAATATACCATGGAAACATGGGCTCAGgtatttatttattgaggttttaattggagataaactctccagcttttttgtgtgtgtgtgaaatttccagcattacaaactcaacttgtacccggtattcaccgtaaacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110376208|gb|EC941257.1|EC941257
EST:     CATCTGATAAGCCATCAGGCTTTGCATATACAATGGAAATATGGGCTCAG                         TTAATATTGGATTTCTTGGATGAAATTGTTCGTAAACCAACTGTGCTGATA
genomic: CATCTGATAAGCCATCAGGCTTTGCATATACAATGGAAATATGGGCTCAGgtatatcttt ... tattctacagTTAATATTGGATTTCTTGGATGAAATTGTTCGTAAACCAACTGTGCTGATA
EST: gi|110708386|gb|EE085867.1|EE085867
EST:     CATCTGATAAGCCATCAGGCTTTGCATATACAATGGAAATATGGGCTCAG                         TTAATATTGGATTTCTTGGATGAAATTGTTCGTAAACCAACTGTGCTGATA
genomic: CATCTGATAAGCCATCAGGCTTTGCATATACAATGGAAATATGGGCTCAGgtatatcttt ... tattctacagTTAATATTGGATTTCTTGGATGAAATTGTTCGTAAACCAACTGTGCTGATA
EST: gi|351012301|gb|FQ429986.1|FQ429986
EST:     CATCTGATAAGCCATCAGGCTTTGCATATACAATGGAAATATGGGCTCAG                         TTAATATTGGATTTCTTGGATGAAATTGTTCGTAAACCAACTGTGCTGATA
genomic: CATCTGATAAGCCATCAGGCTTTGCATATACAATGGAAATATGGGCTCAGgtatatcttt ... tattctacagTTAATATTGGATTTCTTGGATGAAATTGTTCGTAAACCAACTGTGCTGATA
EST: gi|26264357|gb|CA815420.1|CA815420
EST:     CATCTGATAAGCCATCAGGCTTTGCATATACAATGGAAATATGGGCTCAG                         TTAATATTGGATTTCTTGGATGAAATTGTTCGTAAACCAACTGTGCTGATA
genomic: CATCTGATAAGCCATCAGGCTTTGCATATACAATGGAAATATGGGCTCAGgtatatcttt ... tattctacagTTAATATTGGATTTCTTGGATGAAATTGTTCGTAAACCAACTGTGCTGATA
EST: gi|77584623|gb|DV221395.1|DV221395
EST:     CATCTGATAAGCCATCAGGCTTTGCATATACAATGGAAATATGGGCTCAG                         TTAATATTGGATTTCTTGGATGAAATTGTTCGTAAACCAACTGTGCTGATA
genomic: CATCTGATAAGCCATCAGGCTTTGCATATACAATGGAAATATGGGCTCAGgtatatcttt ... tattctacagTTAATATTGGATTTCTTGGATGAAATTGTTCGTAAACCAACTGTGCTGATA
EST: gi|110711535|gb|EE088128.1|EE088128
EST:     CATCTGATAAGCCATCAGGCTTTGCATATACAATGGAAATATGGGCTCAG                         TTAATTTTGGATTTCTTGGATGAAATTGTTCGTAAACCAACTGTGCTGATA
genomic: CATCTGATAAGCCATCAGGCTTTGCATATACAATGGAAATATGGGCTCAGgtatatcttt ... tattctacagTTAATATTGGATTTCTTGGATGAAATTGTTCGTAAACCAACTGTGCTGATA
EST: gi|110712201|gb|EE089554.1|EE089554
EST:     CATCTGATAAGCCATCAGGCTTTGCATATACAATGGAAATATGGGCTCAG                         TTAATTTTGGATTTCTTGGATGAAATTGTTCGTAAACCAACTGTGCTGATA
genomic: CATCTGATAAGCCATCAGGCTTTGCATATACAATGGAAATATGGGCTCAGgtatatcttt ... tattctacagTTAATATTGGATTTCTTGGATGAAATTGTTCGTAAACCAACTGTGCTGATA
EST: gi|352790430|gb|FQ478070.1|FQ478070
EST:     CATCTGATAAGCCATCAGGCTTTGCATATACAATGGAAATATGGGCTCAG                         TTAATATTGGATTTCTTGGATGAAATTGTTCGTAAACCAACTGTGCTGATA
genomic: CATCTGATAAGCCATCAGGCTTTGCATATACAATGGAAATATGGGCTCAGgtatatcttt ... tattctacagTTAATATTGGATTTCTTGGATGAAATTGTTCGTAAACCAACTGTGCTGATA
EST: gi|352798352|gb|FQ480377.1|FQ480377
EST:     CATCTGATAAGCCATCAGGCTTTGCATATACAATGGAAATATGGGCTCAG                         TTAATATTGGATTTCTTGGATGAAATTGTTCGTAAACCAACTGTGCTGATA
genomic: CATCTGATAAGCCATCAGGCTTTGCATATACAATGGAAATATGGGCTCAGgtatatcttt ... tattctacagTTAATATTGGATTTCTTGGATGAAATTGTTCGTAAACCAACTGTGCTGATA
EST: gi|351038339|gb|FQ461031.1|FQ461031
EST:     CATCTGATAAGCCATCAGGCTTTGCATATACAATGGAAATATGGGCTCAG                         TTAATATTGGATTTCTTGGATGAAATTGTTCGTAAACCAACTGTGCTGATA
genomic: CATCTGATAAGCCATCAGGCTTTGCATATACAATGGAAATATGGGCTCAGgtatatcttt ... tattctacagTTAATATTGGATTTCTTGGATGAAATTGTTCGTAAACCAACTGTGCTGATA
EST: gi|351048153|gb|FQ442123.1|FQ442123
EST:     CATCTGATAAGCCATCAGGCTTTGCATATACAATGGAAATATGGGCTCAG                         TTAATATTGGATTTCTTGGATGAAATTGTTCGTAAACCAACTGTGCTGATA
genomic: CATCTGATAAGCCATCAGGCTTTGCATATACAATGGAAATATGGGCTCAGgtatatcttt ... tattctacagTTAATATTGGATTTCTTGGATGAAATTGTTCGTAAACCAACTGTGCTGATA