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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTTATTAGCTATCATGCCAAAGATGATGTACAGTCCACCTATGCTGGTGCACTCTTTCATAATAATCGAAATTATCATGTCTCTTCTTATAAAAACAATgtaagggttctgaattttccccccctttttttttgtttgctttatgtattatactaattttcttacagctccttttccattatagcatattctttttaataaaactgacaaagtaatattgtttgtttggctcttcgtttgaag

Basic information

species Vitis vinifera
transcript Vv18s0075g00120.t01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv18s0075g00120.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA10G36190.1 (Glycine max), 5'ss of exon 2
ATTTATTAGCTATCATGCCAAAGATGATGTACAGTCCACCTATGCTGGTGCACTCTTTCATAATAATCGAAATTATCATGTCTCTTCTTATAAAAACAATgtaagggttctgaattttccccccctttttttttgtttgctttatgtattatactaattttcttacagctccttttccattatagcatattctttttaataaaactgacaaagtaatattgtttgtttggctcttcgtttgaag
|| ||||||||| |||||  | ||||||||||| || ||||||||||||||||||||||| |||  |||||| || || |||||   | | |||||||  |||||   | |  ||          ||   |      ||    | |    |  |  |    | ||   |   || ||  || |||                                                           
ATATATTAGCTACCATGCTGAGGATGATGTACAATCAACCTATGCTGGTGCACTCTTTCACAATGGTCGAAACTACCACGTCTCCAATAAAAAAAACAGAgtaagtaattt--atcaagaggatattaaatgacagatgacgaaagagggactcatagcaacctaacacaatttatcttttgtag-----------------------------------------------------------

upper sequence: Vv18s0075g00120.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA20G31430.1 (Glycine max), 5'ss of exon 2
ATTTATTAGCTATCATGCCAAAGATGATGTACAGTCCACCTATGCTGGTGCACTCTTTCATAATAATCGAAATTATCATGTCTCTTCTTATAAAAACAATgtaagggttctgaattttccccccctttttttttgtttgctttatgtattatactaattttcttacagctccttttccattatagcatattctttttaataaaactgacaaagtaatattgtttgtttggctcttcgtttgaag
|| |||||| ||||||||  | ||||| || ||||| |||||||||||||| |||||||| |||  |||||| || ||||||||   | | |||||||  |||||   | |  ||          ||   |      || |  | |    |  |  |    | ||   |   || ||  || |||                                                           
ATATATTAGTTATCATGCTGAGGATGACGTGCAGTCAACCTATGCTGGTGCGCTCTTTCACAATGGTCGAAACTACCATGTCTCCAATAAAAAAAACAGAgtaagtaattt--atcaagagaatattaaatggcagatgatggaagagggactcatagcaacctaacccaatttatcttttgtag-----------------------------------------------------------