Sequence
atgc intronic sequence ATGC exonic sequenceAGATGGTAAGAGCTTTACATATAACAGTAGTATCAATATTGCGGTTGCAGTGGCCATAGATGGTGGGTTGATTACACCAGTGCTTCAGGATGCTGATAAGgtttgttaatctgttcttgctaaacttaattttggctaccctatggcttttcaagagttaaattaattgcaatttattatag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv18s0072g01000.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: LOC_Os12g08170.1 (Oryza sativa), 5'ss of exon 2
AGATGGTAAGAGCTTTACATATAACAGTAGTATCAATATTGCGGTTGCAGTGGCCATAGATGGTGGGTTGATTACACCAGTGCTTCAGGATGCTGATAAGgtttgttaatct--gttcttgc-taaacttaattttggc-taccctatggcttttcaagagttaaat---taattgcaatttattatag
|||||| |||||||| || || ||||| || || || || || || ||||||||||| ||||||||||||||||| |||||||||| |||||||||||||| | | || |||| || |||||| |||| | ||||| | || || |||| |||||| || | ||
AGATGGGAAGAGCTTCACTTACAACAGCAGCATAAACATCGCTGTGGCAGTGGCCATCGATGGTGGGTTGATTACGCCAGTGCTTCCTGATGCTGATAAGgtacagtgcttgtaattgttgcatatacttaaaattggtgtttatgatggcgtctcttgatgaaaatggttaattgttggtttatgcag
upper sequence: Vv18s0072g01000.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GRMZM2G165176_T01 (Zea mays), 5'ss of exon 4
AGATGGTAAGAGCTTTACATATAACAGTAGTATCAATATTGCGGTTGCAGTGGCCATAGATGGTGGGTTGATTACACCAGTGCTTCAGGATGCTGATAAGgtttgttaatctgttcttgctaaacttaattttggc-taccctatggcttttcaagagttaa--attaattgcaatttattatag
||||| |||||||| || || | |||||||||||| ||||| || ||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| | | | | ||| || | | | ||| | ||| |||| | | || ||| |||| || | ||
GGATGGGAAGAGCTTCACCTACAGCAGTAGTATCAACATTGCCGTGGCAGTGGCCATAGATGGTGGGTTGATTACACCAGTTCTTCAAGATGCTGATAAGgtcaaacactttac-catgcacaa-tgagtgttgatatttttgatgattttttttaaataaatggttacttgctggtttatgcag
upper sequence: Vv18s0072g01000.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GRMZM2G036534_T02 (Zea mays), 5'ss of exon 3
AGATGGTAAGAGCTTTACATATAACAGTAGTATCAATATTGCGGTTGCAGTGGCCATAGATGGTGGGTTGATTACACCAGTGCTTCAGGATGCTGATAAGgtttgttaatctgttcttgctaaacttaattttggctaccc-tatggcttttcaagagttaa--attaattgcaatttattatag
||||| |||||||| ||||| |||| ||||| || ||||| || |||||||||||||||||||||||||||||||| || ||||| |||||||||||||| | | | | ||| | | ||| || | || |||| || | | || ||| || || | ||
GGATGGAAAGAGCTTCACATACAACAAAAGTATAAACATTGCTGTGGCAGTGGCCATAGATGGTGGGTTGATTACACCGGTTCTTCAAGATGCTGATAAGgtcaaacactttac-catgcacga-tgaatgctgatttttgataattttttttaaaaataaatggttacctggtggtttatgcag
upper sequence: Vv18s0072g01000.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA10G35960.2 (Glycine max), 5'ss of exon 3
AGATGGTAAGAGCTTTACATATAACAGTAGTATCAATATTGCGGTTGCAGTGGCCATAGATGGTGGGTTGATTACACCAGTGCTTCAGGATGCTGATAAGgtttgttaat---ctgttcttgctaaacttaattttggctaccctatggcttttcaa---gagttaaa--ttaattgcaatttattatag--------------------
||||||||| |||||||||||||| || || ||||||||||| ||||| ||||| |||||||| || |||||||||||||||||||||| |||||||||||||| ||| || | | | | | | | | ||| || ||| || || | || |||| || | ||||
AGATGGTAATAGCTTTACATATAATAGCAGCATCAATATTGCTGTTGCTGTGGCTATAGATGGCGGATTGATTACACCAGTGCTTCAGGGTGCTGATAAGgtttaccaatactctaatttaagcagcttctaatctccccacctcctgcttttctaatataagatggttctttattgtaaaatggtatatttatttgatgtatattgtag
upper sequence: Vv18s0072g01000.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA20G31630.1 (Glycine max), 5'ss of exon 3
AGATGGTAAGAGCTTTACATATAACAGTAGTATCAATATTGCGGTTGCAGTGGCCATAGATGGTGGGTTGATTACACCAGTGCTTCAGGATGCTGATAAGgtttgttaatctgttcttgctaaacttaattttggctaccctatg----gcttttcaagagttaaat------taattgcaatttattatag----------------
||||||||| |||||||||||||| || || ||||||||||| ||||| ||||| ||||||||||| ||||||||||||||||||||| |||||||||||||| ||| ||| | | || || | | ||| || |||||| | | | || | |||| || | ||||
AGATGGTAATAGCTTTACATATAATAGCAGCATCAATATTGCAGTTGCTGTGGCTATAGATGGTGGACTGATTACACCAGTGCTTCAGGGTGCTGATAAGgttttccaat--actctagtttaagcagcttctagtccccccatctcccacttttctaatataagatggttctttattgtaaaatggtatatttgatgtatattgtagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110383970|gb|EC948379.1|EC948379EST: TGGCCATAGATGGTGGGTTGATTACACCAGTGCTTCAGGATGCTGATAAG GTGGACATTTATTCATTGTCAAGAAAGTGGAAGGAGTTGGTTGACAAGGCC
genomic: TGGCCATAGATGGTGGGTTGATTACACCAGTGCTTCAGGATGCTGATAAGgtttgttaat ... tttattatagGTGGACATTTATTCATTGTCAAGAAAGTGGAAGGAGTTGGTTGACAAGGCC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AGATGGTAAGAGCTTTACATATAACAGTAGTATCAATATTGCGGTTGCAGTGGCCATAGATGGTGGGTTGATTACACCAGTGCTTCAGGATGCTGATAAGgtttgttaatctgttcttgctaaacttaattttggctaccctatggcttttcaagagttaaattaattgcaatttattatag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT