Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAGGGACAGAATGTTTTGCAAGCATTTCTTCAAGTAGCCAAGGAACTTCTTCGGTTGGTGTTAACCCACAATTTTCACCACCGCCCCCATCGTCAAACATgtaattttcctctacacctattctcttttatttcgtttgtgtgaggaaaacttaagatacttttttttcctttccttttttttttttttttctttttccttcatttgatgaccttttaggcacttcttcattgatattgatatgttttgtgaacttttcattatttttctag

Basic information

species Vitis vinifera
transcript Vv18s0041g01360.t01
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110699715|gb|EE076966.1|EE076966
EST:     TCGGTTGGTGTTAACCCACAATTTTCACCACCGCCCCCATCGTCAAACAT                         AGGGTCACCTCTCTTTTGGATTGGAGTTGGTGTTGGGCTCTCGGCACTCTT
genomic: TCGGTTGGTGTTAACCCACAATTTTCACCACCGCCCCCATCGTCAAACATgtaattttcc ... atttttctagAGGGTCACCTCTCTTTTGGATTGGAGTTGGTGTTGGGCTCTCGGCACTCTT
EST: gi|161714077|gb|FC064378.1|FC064378
EST:     TCGGTTGGTGTTAACCCACAATTTTCACCACCGCCCCCATCGTCAAACAT                         AGGGTCACCTCTCTTTTGGATTGGAGTTGGTGTTGGGCTCTCGGCACTCTT
genomic: TCGGTTGGTGTTAACCCACAATTTTCACCACCGCCCCCATCGTCAAACATgtaattttcc ... atttttctagAGGGTCACCTCTCTTTTGGATTGGAGTTGGTGTTGGGCTCTCGGCACTCTT
EST: gi|37188434|gb|CF607783.1|CF607783
EST:     TCGGTTGGTGTTAACCCACAATTTTCACCACCGCCCCCATCGTCAAACAT                         AGGGTCACCTCTCTTTTGGATTGGAGTTGGTGTTGGGCTCTCGGCACTCTT
genomic: TCGGTTGGTGTTAACCCACAATTTTCACCACCGCCCCCATCGTCAAACATgtaattttcc ... atttttctagAGGGTCACCTCTCTTTTGGATTGGAGTTGGTGTTGGGCTCTCGGCACTCTT