1 5' 3' | 2 5' 3' | 3 5' 3' |
CCTATACAAGTTCAGGCACTGGGGTTATATGGAGGGTCCTTTTAAAGGGCATGCACCCACTGGAGAACGGATAGAAGTCTTTGGGATGGCCATTTTTGAGgtgctccttcaacctactcttcttactcctctcctttgttatggagctaattctcttatgtcttgaaacag
species | Vitis vinifera |
transcript | Vv18s0001g15660.t01 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: ATGCACCCACTGGAGAACGTATAGAAGTCTTTGGGATGGCCATTTTTGAG CAAGATGAGCATTCAAAAATTGTGAAGGTGGAGTTCTTTTACGACCGCGGAEST: gi|26257612|gb|CA808675.1|CA808675
genomic: ATGCACCCACTGGAGAACGGATAGAAGTCTTTGGGATGGCCATTTTTGAGgtgctccttc ... cttgaaacagCAAGATGAGCATTCAAAAATTGTGAAGGTGGAGTTCTTTTACGACCGCGGA
EST: ATGCACCCACTGGAGAACAGATTGAAGTCTTTGGGATGGCCATTTTTGAG CAAGATGAGCATCCAAAAATTGTGAAGGTGGAGTTCTTTTACGACCGCGGA
genomic: ATGCACCCACTGGAGAACGGATAGAAGTCTTTGGGATGGCCATTTTTGAGgtgctccttc ... cttgaaacagCAAGATGAGCATTCAAAAATTGTGAAGGTGGAGTTCTTTTACGACCGCGGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCTATACAAGTTCAGGCACTGGGGTTATATGGAGGGTCCTTTTAAAGGGCATGCACCCACTGGAGAACGGATAGAAGTCTTTGGGATGGCCATTTTTGAGgtgctccttcaacctactcttcttactcctctcctttgttatggagctaattctcttatgtcttgaaacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT