Sequence
atgc intronic sequence ATGC exonic sequenceGAGGACATACCGGAGACCGGATGAAAAATCTGGAGGCCATGGTGTTGGATGGAGTCCGATTATTCCTTACATCTTTTCAGTCCCTTCTGGTTGGGAAGAGgtaataatctacctccactggactatagactcgacccctatattgattcattttcccccttcctggacatctacctctaccacaatttcaccaaataagcttcttgatccatgtcacag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv18s0001g15360.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA06G12760.1 (Glycine max), 5'ss of exon 2
GAGGACATACCGGAGACCGGATGAAAAATCTGGAGGCCATGGTGTTGGATGGAGTCCGATTATTCCTTACATCTTTTCAGTCCCTTCTGGTTGGGAAGAGgtaataatctacctccactggactatagactcgacccctatattgattcattttcccccttcctggacatctacctctaccacaatttcaccaaataagcttcttgatccatgtcacag
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GAGGACGTATCGCAGGCCGGATGAGAAGTCTGGAGGACATGGTGTTGGATGGAGTCCTATTATTCCATACAGCTTCAGAGTGCCCAAAGAATGGGAAGAGgtgatgcttaatgatctcttatagttaaagttggaa---aaagtgttttaagtatacagt-----ggaaaagaccaatgaaataactcctatttctgtcgttttgggt-----------
upper sequence: Vv18s0001g15360.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA04G42010.1 (Glycine max), 5'ss of exon 2
GAGGACATACCGGAGACCGGATGAAAAATCTGGAGGCCATGGTGTTGGATGGAGTCCGATTATTCCTTACATCTTTTCAGTCCCTTCTGGTTGGGAAGAGgtaataatctacctccactggactatagactcgacccctatattgattcattttcccccttcctggacatctacctctaccacaatttcaccaaataagcttcttgatccatgtcacag
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GAGGACCTATCGCAGGCCGGATGAGAAGTCAGGAGGACATGGTGTTGGATGGAGTCCTATTATTCCATACAGCTTCAGAGTGCCTGAAGAATGGGAAGAGgtgatgcttaatgatctcttctagttaaagttgg-----aaaaaagtt---tttaagtatacagtggaaaagactaatgaaataactcctatttgtctcgttttgggt-----------
upper sequence: Vv18s0001g15360.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: AT1G77090.1 (Arabidopsis thaliana), 5'ss of exon 2
GAGGACATACCGGAGACCGGATGAAAAATCTGGAGGCCATGGTGTTGGATGGAGTCCGATTATTCCTTACATCTTTTCAGTCCCTTCTGGTTGGGAAGAGgtaataatctacctccactggactatagactcgacccctatattgattcattttcccccttcctggacatctacctctaccacaatttcaccaaataagcttcttgatccatgtcacag
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GAGAACATACCGTAGACCAGACGAGAAGTCAGGAGGGCATGGTGTTGGTTGGAGTCCTATTATCCCTTACGCCTTTTCGGTTCCTCAAGATTGGAATGAGgt-----tttgtccc---ttggctcttgtttcttcgtttctatggttt----ttagtcatactttgagattcttttc----attgttgtatcaaatttag-------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110731146|gb|EE109038.1|EE109038EST: GGAGTCCGATTATTCCTTACATCTTTTCAGTCCCTTCTGGTTGGGAAGAG GTTCCTGTATCAATTGCAGATCTAGGTGGGACAGAGATTGATTTGAGGTTT
genomic: GGAGTCCGATTATTCCTTACATCTTTTCAGTCCCTTCTGGTTGGGAAGAGgtaataatct ... catgtcacagGTTCCTGTATCAATTGCAGATCTAGGTGGGACAGAGATTGATTTGAGGTTT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GAGGACATACCGGAGACCGGATGAAAAATCTGGAGGCCATGGTGTTGGATGGAGTCCGATTATTCCTTACATCTTTTCAGTCCCTTCTGGTTGGGAAGAGgtaataatctacctccactggactatagactcgacccctatattgattcattttcccccttcctggacatctacctctaccacaatttcaccaaataagcttcttgatccatgtcacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA