1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
CAGAAGCTGATTCTGAAGAGTTGGTGAATCCACCAAAGGTTGAAGAGAAAATTGGAGCTGTTCCAAATGGTTTATCCACTGATTCTGATGTCGCAAAGAGgtttttacttttctagtgaatcattttttttcttccgtttgtttttgttttacatatctcaagtgcttttctgttttgatttag
species | Vitis vinifera |
transcript | Vv18s0001g14500.t01 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: ATTGGAGCTGTTCCAAATGGTTTATCCACTGATTCTGATGTCGCAAAGAG GGAAGCTGAGTCTATCTCCAAAAGAAATCTCCGTGCCAATGCGGAGAAGTTEST: gi|161705792|gb|FC056663.1|FC056663
genomic: ATTGGAGCTGTTCCAAATGGTTTATCCACTGATTCTGATGTCGCAAAGAGgtttttactt ... tttgatttagGGAAGCTGAGTCTATCTCCAAAAGAAATCTCCGTGCCAATGCGGAGAAGTT
EST: ATTGGAGCTGTTCCAAATGGTTTATCCACTGATTCTGATGTCGCAAAGAG GGAAGCTGAGTCTATCTCCAAAAGAAATCTCCGTGCCAATGCGGAGAAGTTEST: gi|110710305|gb|EE086522.1|EE086522
genomic: ATTGGAGCTGTTCCAAATGGTTTATCCACTGATTCTGATGTCGCAAAGAGgtttttactt ... tttgatttagGGAAGCTGAGTCTATCTCCAAAAGAAATCTCCGTGCCAATGCGGAGAAGTT
EST: ATTGGAGCTGTTCCAAATGGTTTATCCACTGATTCTGATGTCGCAAAGAG GGAAGCTGAGTCTATCTCCAAAAGAAATCTCCGTGCCAATGCGGAGAAGTTEST: gi|352764021|gb|FQ467591.1|FQ467591
genomic: ATTGGAGCTGTTCCAAATGGTTTATCCACTGATTCTGATGTCGCAAAGAGgtttttactt ... tttgatttagGGAAGCTGAGTCTATCTCCAAAAGAAATCTCCGTGCCAATGCGGAGAAGTT
EST: ATTGGAGCTGTTCCAAATGGTTTATCCACTGATTCTGATGTCGCAAAGAG GGAAGCTGAGTCTATCTCCAAAAGAAATCTCCGTGCCAATGCGGAGAAGTTEST: gi|110709700|gb|EE085391.1|EE085391
genomic: ATTGGAGCTGTTCCAAATGGTTTATCCACTGATTCTGATGTCGCAAAGAGgtttttactt ... tttgatttagGGAAGCTGAGTCTATCTCCAAAAGAAATCTCCGTGCCAATGCGGAGAAGTT
EST: ATTGGAGCTGTTCCAAATGGTTTATCCACTGATTCTGATGTCGCAAAGAG GGAAGCTGAGTCTATCTCCAAAAGAAATCTCCGTGCCAATGCGGAGAAGTTEST: gi|110726118|gb|EE101621.1|EE101621
genomic: ATTGGAGCTGTTCCAAATGGTTTATCCACTGATTCTGATGTCGCAAAGAGgtttttactt ... tttgatttagGGAAGCTGAGTCTATCTCCAAAAGAAATCTCCGTGCCAATGCGGAGAAGTT
EST: ATTGGAGCTGTTCCAAATGGTTTATCCACTGATTCTGATGTCGCAAAGAG GGAAGCTGAGTCTATCTCCAAAAGAAATCTCCGTGCCAATGCGGAGAAGTTEST: gi|110724805|gb|EE100952.1|EE100952
genomic: ATTGGAGCTGTTCCAAATGGTTTATCCACTGATTCTGATGTCGCAAAGAGgtttttactt ... tttgatttagGGAAGCTGAGTCTATCTCCAAAAGAAATCTCCGTGCCAATGCGGAGAAGTT
EST: ATTGGAGCTGTTCCAAATGGTTTATCCACTGATTCTGATGTCGCAAAGAG GGAAGCTGAGTCTATCTCCAAAAGAAATCTCCGTGCCAATGCGGAGAAGTT
genomic: ATTGGAGCTGTTCCAAATGGTTTATCCACTGATTCTGATGTCGCAAAGAGgtttttactt ... tttgatttagGGAAGCTGAGTCTATCTCCAAAAGAAATCTCCGTGCCAATGCGGAGAAGTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAGAAGCTGATTCTGAAGAGTTGGTGAATCCACCAAAGGTTGAAGAGAAAATTGGAGCTGTTCCAAATGGTTTATCCACTGATTCTGATGTCGCAAAGAGgtttttacttttctagtgaatcattttttttcttccgtttgtttttgttttacatatctcaagtgcttttctgttttgatttag
- - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG