Skip to another splice site:
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGACCCAAGAATCCTTACATCGGAAAATGTCTCCTCAACACCAAGATTACTGGAGACGATGCTCCAGGAGAGACCTGGCACATGGTATTCACCACTGAGGgtcagcttctttaccatgcctatctctcttgataattgaaggatttcttttttcttttttcttttataattttttagtagttgtgaataaattatgggattattcttgcatttgattgttgcgttggataatctgataaaacag

Basic information

species Vitis vinifera
transcript Vv18s0001g14450.t01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv18s0001g14450.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: LOC_Os06g01850.1 (Oryza sativa), 5'ss of exon 1
AGACCCAAGAATCCTTACATCGGAAAATGTCTCCTCAACACCAAGATTACTGGAGACGATGCTCCAGGAGAGACCTGGCACATGGTATTCACCACTGAGGgtcagcttctttaccatgcctatctctcttgataattgaaggatttcttttttcttttttcttttataattttttagtagttgtgaataaattatgggattattcttgcatttgattgttgcgttggataatctgataaaacag
|| |||||| | || ||| |||| || || ||||||||||||||||| || |  ||||| || || || ||||| ||||||||||| |||| ||| ||||||| |   ||  | ||| | |      |     |||  ||     ||   |    |  ||  ||  | | |  | || | |||                                                             
AGGCCCAAGGAGCCCTACGTCGGCAAGTGCCTCCTCAACACCAAGATCACCGCCGACGACGCGCCCGGCGAGACATGGCACATGGTCTTCAGCACCGAGGgtctgtaactc-atcatccatcctatccaatccaatccaa-----tccaatccaatccttgattactcactactcagga-ttgcag----------------------------------------------------------

upper sequence: Vv18s0001g14450.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GRMZM2G168143_T01 (Zea mays), 5'ss of exon 1
AGACCCAAGAATCCTTACATCGGAAAATGTCTCCTCAACACCAAGATTACTGGAGACGATGCTCCAGGAGAGACCTGGCACATGGTATTCACCACTGAGGgtcagcttctttaccatgcctatctctcttgataattgaaggatttcttttttcttttttcttttataattttttagtagttgtgaataaattatgggattattcttgcatttgattgttgcgttggataatctgataaaacag
|  |||||| | || ||| |||| |  || ||||||||||||||||| || || ||||| || || || ||||| ||||||||||| |||| ||| || ||| || | ||           |    ||| |||  |||  |   |  ||  ||| ||   ||  | || |  | | |||  | | ||    | ||||    |    ||||    |  |  |                       
AAGCCCAAGGAGCCGTACGTCGGCAGGTGCCTCCTCAACACCAAGATCACCGGCGACGACGCGCCGGGGGAGACGTGGCACATGGTCTTCAGCACCGAAGgt-aggtactgaggttcaaaaaaaaatct-gatttttgctgc-ctcgttcgttcgttcaactgctgtattcgtatcgtatgtataaacgc-tgatggacgcacgtatgcaccgcac-gcag-----------------------

upper sequence: Vv18s0001g14450.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA02G05350.1 (Glycine max), 5'ss of exon 2
AGACCCAAGAATCCTTACATCGGAAAATGTCTCCTCAACACCAAGATTACTGGAGACGATGCTCCAGGAGAGACCTGGCACATGGTATTCACCACTGAGGgtcagcttctttaccatgcctatctctcttgataattgaaggatttcttttttcttttttcttttata-attttttagtag-ttgtgaataaattatgggattattcttgcatttgattgttgcgttggataatctgataaaacag
| ||||||||  |||||||| || | ||| || |||||||| ||||| ||||| || |||||||||||||| || ||||||||||| |||| ||| ||||||| | | ||    | |           ||     ||   |   || | ||||| | |  | |  ||| | | |  ||||| |||   ||||| | || | || |      ||||  |  |    ||| |                
AAACCCAAGACCCCTTACATTGGTAGATGCCTGCTCAACACAAAGATCACTGGGGATGATGCTCCAGGAGAAACTTGGCACATGGTCTTCAGCACCGAGGgtcggatgctcattcgttttccctctattttcctttttttgttcttttattttcctataccctccatagactgtaaagtagattgctgataaaatttgtgtttttgagcaaatttagtgttattattgcag---------------

upper sequence: Vv18s0001g14450.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA16G23710.1 (Glycine max), 5'ss of exon 2
AGACCCAAGAATCCTTACATCGGAAAATGTCTCCTCAACACCAAGATTACTGGAGACGATGCTCCAGGAGAGACCTGGCACATGGTATTCACCACTGAGGgtcagcttctttaccatgcctatctctcttgataattgaaggatttcttttttcttttttcttttataattttttagtagttgtgaataaatta-tgggattattcttgcatttgattgttgcgttggataatctgataaaacag
| ||||||||  |||||| | || | ||| || |||||||| ||||| ||||| || |||||||||||||| || ||||||||||| |||| ||| ||||||  | | ||    | |   | || ||||             ||||   ||| |||| || |  | ||          ||     | || |||  ||  |  |||  ||  |||||  | |    |   |  | | ||   |   
AAACCCAAGACCCCTTACGTTGGTAGATGCCTGCTCAACACAAAGATCACTGGGGATGATGCTCCAGGAGAAACTTGGCACATGGTCTTCAGCACCGAGGgttggatgctcattcgt---tttccctct-------------attttcctttcctttcttttactttaccccccatagagcgtaaagtagattgctgataaaatttgtgtttttga--gctaaaattagtgttattattgcag--

upper sequence: Vv18s0001g14450.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA11G08230.1 (Glycine max), 5'ss of exon 2
AGACCCAAGAATCCTTACATCGGAAAATGTCTCCTCAACACCAAGATTACTGGAGACGATGCTCCAGGAGAGACCTGGCACATGGTATTCACCACTGAGGgtcagcttctttaccatgcctatctctcttgataattgaaggatttcttttttcttttttcttttataattttttag-tagttgtgaataaattatgggattattcttgcatttgattgttgcgttggataatc-tgataaaacag
| ||||||||| || || || || |  ||||| |||||||| ||||| ||||| || ||||| || ||||| || ||||||||||| |||| |||||||||| || | ||| |  ||   | ||||||     ||||      || | ||||| |    ||  | || ||    | | | | | | || || | | ||| || |   |  |||  |         || ||| |  |  ||   |||
AAACCCAAGAACCCATATATTGGTAGGTGTCTTCTCAACACAAAGATCACTGGGGATGATGCACCTGGAGAAACTTGGCACATGGTCTTCAGCACTGAGGgt-aggtgcttaa--atatttttctctc-----aatt------ttacctttttttcccgtcactaatcataacatggatcgcttttaaaaagtca-gggtttttgggtaaattaaaaaa--aatatgtatatttgtattatttcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110372040|gb|EC936182.1|EC936182
EST:     TGGAGACGATGCTCCAGGAGAGACCTGGCACATGGTATTCACCACTGAGG                         GGGAAGTCCCATATAGAGAGGGGCAATCTATTGGTGTGATTCCGGATGGTA
genomic: TGGAGACGATGCTCCAGGAGAGACCTGGCACATGGTATTCACCACTGAGGgtcagcttct ... gataaaacagGGGAAGTCCCATATAGAGAGGGGCAATCTATTGGTGTGATTCCGGATGGTA
EST: gi|351024744|gb|FQ430569.1|FQ430569
EST:     TGGAGACGATGCTCCAGGAGAGACCTGGCACATGGTATTCACCACTGAGG                         GGGAAGTCCCATATAGAGAGGGGCAATCTATTGGTGTGATTCCGGATGGTA
genomic: TGGAGACGATGCTCCAGGAGAGACCTGGCACATGGTATTCACCACTGAGGgtcagcttct ... gataaaacagGGGAAGTCCCATATAGAGAGGGGCAATCTATTGGTGTGATTCCGGATGGTA
EST: gi|351046424|gb|FQ453040.1|FQ453040
EST:     TGGAGACGATGCTCCAGGAGAGACCTGGCACATGGTATTCACCACTGAGG                         GGGAAGTCCCATATAGAGAGGGGCAATCTATTGGTGTGATTCCGGATGGTA
genomic: TGGAGACGATGCTCCAGGAGAGACCTGGCACATGGTATTCACCACTGAGGgtcagcttct ... gataaaacagGGGAAGTCCCATATAGAGAGGGGCAATCTATTGGTGTGATTCCGGATGGTA
EST: gi|349811782|gb|FQ410579.1|FQ410579
EST:     TGGAGACGATGCTCCAGGAGAGACCTGGCACATGGTATTCACCACTGAGG                         GGGAAGTCCCATATAGAGAGGGGCAATCTATTGGTGTGATTCCGGATGGTA
genomic: TGGAGACGATGCTCCAGGAGAGACCTGGCACATGGTATTCACCACTGAGGgtcagcttct ... gataaaacagGGGAAGTCCCATATAGAGAGGGGCAATCTATTGGTGTGATTCCGGATGGTA
EST: gi|351044400|gb|FQ452952.1|FQ452952
EST:     TGGAGACGATGCTCCAGGAGAGACCTGGCACATGGTATTCACCACTGAGG                         GGGAAGTCCCATATAGAGATGGGCAATCTATTGGTGTGATTCCGGATGGTA
genomic: TGGAGACGATGCTCCAGGAGAGACCTGGCACATGGTATTCACCACTGAGGgtcagcttct ... gataaaacagGGGAAGTCCCATATAGAGAGGGGCAATCTATTGGTGTGATTCCGGATGGTA
EST: gi|351045818|gb|FQ441003.1|FQ441003
EST:     TGGAGACGATGCTCCAGGAGAGACCTGGCACATGGTATTCACCACTGAGG                         GGGAAGTCCCATATAGAGAGGGGCAATCTATTGGTGTGATTCCGGATGGTA
genomic: TGGAGACGATGCTCCAGGAGAGACCTGGCACATGGTATTCACCACTGAGGgtcagcttct ... gataaaacagGGGAAGTCCCATATAGAGAGGGGCAATCTATTGGTGTGATTCCGGATGGTA
EST: gi|351046370|gb|FQ452986.1|FQ452986
EST:     TGGAGACGATGCTCCAGGAGAGACCTGGCACATGGTATTCACCACTGAGG                         GGGAAGTCCCATATAGAGAGGGGCAATCTATTGGTGTGATTCCGGATGGTA
genomic: TGGAGACGATGCTCCAGGAGAGACCTGGCACATGGTATTCACCACTGAGGgtcagcttct ... gataaaacagGGGAAGTCCCATATAGAGAGGGGCAATCTATTGGTGTGATTCCGGATGGTA
EST: gi|351052122|gb|FQ455415.1|FQ455415
EST:     TGGAGACGATGCTCCAGGAGAGACCTGGCACATGGTATTCACCACTGAGG                         GGGAAGTCCCATATAGAGAGGGGCAATCTATTGGTGTGATTCCGGATGGTA
genomic: TGGAGACGATGCTCCAGGAGAGACCTGGCACATGGTATTCACCACTGAGGgtcagcttct ... gataaaacagGGGAAGTCCCATATAGAGAGGGGCAATCTATTGGTGTGATTCCGGATGGTA
EST: gi|351042242|gb|FQ442709.1|FQ442709
EST:     TGGAGACGATGCTCCAGGAGAGACCTGGCACATGGTATTCACCACTGAGG                         GGGAAGTCCCATATAGAGAGGGGCAATCTATTGGTGTGATTCCGGATGGTA
genomic: TGGAGACGATGCTCCAGGAGAGACCTGGCACATGGTATTCACCACTGAGGgtcagcttct ... gataaaacagGGGAAGTCCCATATAGAGAGGGGCAATCTATTGGTGTGATTCCGGATGGTA
EST: gi|351032748|gb|FQ462462.1|FQ462462
EST:     TGGAGACGATGCTCCAGGAGAGACCTGGCACATGGTATTCACCACTGAGG                         GGGAAGTCCCATATAGAGAGGGGCAATCTATTGGTGTGATTCCGGATGGTA
genomic: TGGAGACGATGCTCCAGGAGAGACCTGGCACATGGTATTCACCACTGAGGgtcagcttct ... gataaaacagGGGAAGTCCCATATAGAGAGGGGCAATCTATTGGTGTGATTCCGGATGGTA
EST: gi|351019671|gb|FQ439488.1|FQ439488
EST:     TGGAGACGATGCTCCAGGAGAGACCTGGCACATGGTATTCACCACTGAGG                         GGGAAGTCCCATATAGAGAGGGGCAATCTATTGGTGTGATTCCGGATGGTA
genomic: TGGAGACGATGCTCCAGGAGAGACCTGGCACATGGTATTCACCACTGAGGgtcagcttct ... gataaaacagGGGAAGTCCCATATAGAGAGGGGCAATCTATTGGTGTGATTCCGGATGGTA
EST: gi|351055385|gb|FQ441983.1|FQ441983
EST:     TGGAGACGATGCTCCAGGAGAGACCTGGCACATGGTATTCACCACTGAGG                         GGGAAGTCCCATATAGAGAGGGGCAATCTATTGGTGTGATTCCGGATGGTA
genomic: TGGAGACGATGCTCCAGGAGAGACCTGGCACATGGTATTCACCACTGAGGgtcagcttct ... gataaaacagGGGAAGTCCCATATAGAGAGGGGCAATCTATTGGTGTGATTCCGGATGGTA
EST: gi|349825116|gb|FQ415663.1|FQ415663
EST:     TGGAGACGATGCTCCAGGAGAGACCTGGCACATGGTATTCACCACTGAGG                         GGGAAGTCCCATATAGAGAGGGGCAATCTATTGGTGTGATTCCGGATGGTA
genomic: TGGAGACGATGCTCCAGGAGAGACCTGGCACATGGTATTCACCACTGAGGgtcagcttct ... gataaaacagGGGAAGTCCCATATAGAGAGGGGCAATCTATTGGTGTGATTCCGGATGGTA
EST: gi|351039066|gb|FQ457741.1|FQ457741
EST:     TGGAGACGATGCTCCAGGAGAGACCTGGCACATGGTATTCACCACTGAGG                         GGGAAGTCCCATATAGAGAGGGGCAATCTATTGGTGTGATTCCGGATGGTA
genomic: TGGAGACGATGCTCCAGGAGAGACCTGGCACATGGTATTCACCACTGAGGgtcagcttct ... gataaaacagGGGAAGTCCCATATAGAGAGGGGCAATCTATTGGTGTGATTCCGGATGGTA
EST: gi|351057238|gb|FQ450945.1|FQ450945
EST:     TGGAGACGATGCTCCAGGAGAGACCTGGCACATGGTATTCACCACTGAGG                         GGGAAGTCCCATATAGAGAGGGGCAATCTATTGGTGTGATTCCGGATGGTA
genomic: TGGAGACGATGCTCCAGGAGAGACCTGGCACATGGTATTCACCACTGAGGgtcagcttct ... gataaaacagGGGAAGTCCCATATAGAGAGGGGCAATCTATTGGTGTGATTCCGGATGGTA
EST: gi|33404726|gb|CF210353.1|CF210353
EST:     TGGAGACGATGCTCCAGGAGAGACCTGGCACATGGTATTCACCACTGAGG                         GGGAAGTCCCATATAGAGAGGGGCAATCTATTGGTGTGATTCCGGATGGTA
genomic: TGGAGACGATGCTCCAGGAGAGACCTGGCACATGGTATTCACCACTGAGGgtcagcttct ... gataaaacagGGGAAGTCCCATATAGAGAGGGGCAATCTATTGGTGTGATTCCGGATGGTA
EST: gi|351044758|gb|FQ449012.1|FQ449012
EST:     TGGAGACGATGCTCCAGGAGAGACCTGGCACATGGTATTCACCACTGAGG                         GGGAAGTCCCATATAGAGAGGGGCAATCTATTGGTGTGATTCCGGATGGTA
genomic: TGGAGACGATGCTCCAGGAGAGACCTGGCACATGGTATTCACCACTGAGGgtcagcttct ... gataaaacagGGGAAGTCCCATATAGAGAGGGGCAATCTATTGGTGTGATTCCGGATGGTA
EST: gi|349816231|gb|FQ403727.1|FQ403727
EST:     TGGAGACGATGCTCCAGGAGAGACCTGGCACATGGTATTCACCACTGAGG                         GGGAAGTCCCATATAGAGAGGGGCAATCTATTGGTGTGATTCCGGATGGTA
genomic: TGGAGACGATGCTCCAGGAGAGACCTGGCACATGGTATTCACCACTGAGGgtcagcttct ... gataaaacagGGGAAGTCCCATATAGAGAGGGGCAATCTATTGGTGTGATTCCGGATGGTA
EST: gi|351055701|gb|FQ452166.1|FQ452166
EST:     TGGAGACGATGCTCCAGGAGGGACCTGGCACATGGTATTCACCACTGAGG                         GGGAAGTCCCATATAGAGAGGGGCAATCTATTGGTGTGATTCCGGATGGTA
genomic: TGGAGACGATGCTCCAGGAGAGACCTGGCACATGGTATTCACCACTGAGGgtcagcttct ... gataaaacagGGGAAGTCCCATATAGAGAGGGGCAATCTATTGGTGTGATTCCGGATGGTA
EST: gi|351035786|gb|FQ463631.1|FQ463631
EST:     TGGAGACGATGCTCCAGGAGAGACCTGGCACATGGTATTCACCACTGAGG                         GGGAAGTCCCATATAGAGAGGGGCAATCTATTGGTGTGATTCCGGATGGTA
genomic: TGGAGACGATGCTCCAGGAGAGACCTGGCACATGGTATTCACCACTGAGGgtcagcttct ... gataaaacagGGGAAGTCCCATATAGAGAGGGGCAATCTATTGGTGTGATTCCGGATGGTA
EST: gi|349811497|gb|FQ409493.1|FQ409493
EST:     TGGAGACGATGCTCCAGGAGAGACCTGGCACATGGTATTCACCACTGAGG                         GGGAAGTCCCATATAGAGAGGGGCAATCTATTGGTGTGATTCCGGATGGTA
genomic: TGGAGACGATGCTCCAGGAGAGACCTGGCACATGGTATTCACCACTGAGGgtcagcttct ... gataaaacagGGGAAGTCCCATATAGAGAGGGGCAATCTATTGGTGTGATTCCGGATGGTA
EST: gi|349814907|gb|FQ410130.1|FQ410130
EST:     TGGAGACGATGCTCCAGGAGAGACCTGGCACATGGTATTCACCACTGAGG                         GGGAAGTCCCATATAGAGAGGGGCAATCTATTGGTGTGATTCCGGATGGTA
genomic: TGGAGACGATGCTCCAGGAGAGACCTGGCACATGGTATTCACCACTGAGGgtcagcttct ... gataaaacagGGGAAGTCCCATATAGAGAGGGGCAATCTATTGGTGTGATTCCGGATGGTA
EST: gi|351045587|gb|FQ440772.1|FQ440772
EST:     TGGAGACGATGCTCCAGGAGAGACCTGGCACATGGTATTCACCACTGAGG                         GGGAAGTCCCATATAGAGAGGGGCAATCTATTGGTGTGATTCCGGATGGTA
genomic: TGGAGACGATGCTCCAGGAGAGACCTGGCACATGGTATTCACCACTGAGGgtcagcttct ... gataaaacagGGGAAGTCCCATATAGAGAGGGGCAATCTATTGGTGTGATTCCGGATGGTA
EST: gi|351053728|gb|FQ441494.1|FQ441494
EST:     TGGAGACGATGCTCCAGGAGAGACCTGGCACATGGTATTCACCACTGAGG                         GGGAAGTCCCATATAGAGAGGGGCAATCTATTGGTGTGATTCCGGATGGTA
genomic: TGGAGACGATGCTCCAGGAGAGACCTGGCACATGGTATTCACCACTGAGGgtcagcttct ... gataaaacagGGGAAGTCCCATATAGAGAGGGGCAATCTATTGGTGTGATTCCGGATGGTA
EST: gi|351056890|gb|FQ443517.1|FQ443517
EST:     TGGAGACGATGCTCCAGGAGAGACCTGGCACATGGTATTCACCACTGAGG                         GGGAAGTCCCATATAGAGAGGGGCAATCTATTGGTGTGATTCCGGATGGTA
genomic: TGGAGACGATGCTCCAGGAGAGACCTGGCACATGGTATTCACCACTGAGGgtcagcttct ... gataaaacagGGGAAGTCCCATATAGAGAGGGGCAATCTATTGGTGTGATTCCGGATGGTA
EST: gi|349825028|gb|FQ415575.1|FQ415575
EST:     TGGAGACGATGCTCCAGGAGAGACCTGGCACATGGTATTCACCACTGAGG                         GGGAAGTCCCATATAGAGAGGGGCAATCTATTGGTGTGATTCCGGATGGTA
genomic: TGGAGACGATGCTCCAGGAGAGACCTGGCACATGGTATTCACCACTGAGGgtcagcttct ... gataaaacagGGGAAGTCCCATATAGAGAGGGGCAATCTATTGGTGTGATTCCGGATGGTA
EST: gi|351053267|gb|FQ459135.1|FQ459135
EST:     TGGAGACGGTGCTCCAGGAGAGACCTGGCACATGGTATTCACCACTGAGG                         GGGAAGTCCCATATAGAGAGGGGCAATCTATTGGTGTGATTCCGGATGGTA
genomic: TGGAGACGATGCTCCAGGAGAGACCTGGCACATGGTATTCACCACTGAGGgtcagcttct ... gataaaacagGGGAAGTCCCATATAGAGAGGGGCAATCTATTGGTGTGATTCCGGATGGTA
EST: gi|351025508|gb|FQ435201.1|FQ435201
EST:     TGGAGACGATGCTCCAGGAGAGACCTGGCACATGGTATTCACCACTGAGG                         GGGAAGTCCCATATAGAGAGGGGCAATCTATTGGTGTGATTCCGGATGGTA
genomic: TGGAGACGATGCTCCAGGAGAGACCTGGCACATGGTATTCACCACTGAGGgtcagcttct ... gataaaacagGGGAAGTCCCATATAGAGAGGGGCAATCTATTGGTGTGATTCCGGATGGTA
EST: gi|351044587|gb|FQ443118.1|FQ443118
EST:     TGGAGACGATGCTCCAGGAGAGACCTGGCACATGGTATTCACCACTGAGG                         GGGAAGTCCCATATAGAGAGGGGCAATCTATTGGTGTGATTCCGGATGGTA
genomic: TGGAGACGATGCTCCAGGAGAGACCTGGCACATGGTATTCACCACTGAGGgtcagcttct ... gataaaacagGGGAAGTCCCATATAGAGAGGGGCAATCTATTGGTGTGATTCCGGATGGTA
EST: gi|110371343|gb|EC935294.1|EC935294
EST:     TGGAGACGATGCTCCAGGAGAGACCTGGCACATGGTATTCACCACTGAGG                         GGGAAGTCCCATATAGAGAGGGGCAATCTATTGGTGTGATTCCGGATGGTA
genomic: TGGAGACGATGCTCCAGGAGAGACCTGGCACATGGTATTCACCACTGAGGgtcagcttct ... gataaaacagGGGAAGTCCCATATAGAGAGGGGCAATCTATTGGTGTGATTCCGGATGGTA
EST: gi|351045767|gb|FQ440952.1|FQ440952
EST:     TGGAGACGATGCTCCAGGAGAGACCTGGCACATGGTATTCACCACTGAGG                         GGGAAGTCCCATATAGAGAGGGGCAATCTATTGGTGTGATTCCGGATGGTA
genomic: TGGAGACGATGCTCCAGGAGAGACCTGGCACATGGTATTCACCACTGAGGgtcagcttct ... gataaaacagGGGAAGTCCCATATAGAGAGGGGCAATCTATTGGTGTGATTCCGGATGGTA
EST: gi|349829231|gb|FQ419763.1|FQ419763
EST:     TGGAGACGATGCTCCAGGAGAGACCTGGCACATGGTATTCACCACTGAGG                         GGGAAGTCCCATATAGAGAGGGGCAATCTATTGGTGTGATTCCGGATGGTA
genomic: TGGAGACGATGCTCCAGGAGAGACCTGGCACATGGTATTCACCACTGAGGgtcagcttct ... gataaaacagGGGAAGTCCCATATAGAGAGGGGCAATCTATTGGTGTGATTCCGGATGGTA
EST: gi|349810724|gb|FQ402967.1|FQ402967
EST:     TGGAGACGATGCTCCAGGAGAGACCTGGCACATGGTATTCACCACTGAGG                         GGGAAGTCCCATATAGAGAGGGGCAATCTATTGGTGTGATTCCGGATGGTA
genomic: TGGAGACGATGCTCCAGGAGAGACCTGGCACATGGTATTCACCACTGAGGgtcagcttct ... gataaaacagGGGAAGTCCCATATAGAGAGGGGCAATCTATTGGTGTGATTCCGGATGGTA
EST: gi|349812990|gb|FQ411230.1|FQ411230
EST:     TGGAGACGATGCTCCAGGAGAGACCTGGCACATGGTATTCACCACTGAGG                         GGGAAGTCCCATATAGAGAGGGGCAATCTATTGGTGTGATTCCGGATGGTA
genomic: TGGAGACGATGCTCCAGGAGAGACCTGGCACATGGTATTCACCACTGAGGgtcagcttct ... gataaaacagGGGAAGTCCCATATAGAGAGGGGCAATCTATTGGTGTGATTCCGGATGGTA
EST: gi|110379774|gb|EC944993.1|EC944993
EST:     TGGAGACGATGCTCCAGGAGAGACCTGGCACATGGTATTCACCACTGAGG                         GGGAAGTCCCATATAGAGAGGGGCAATCTATTGGTGTGATTCCGGATGGTA
genomic: TGGAGACGATGCTCCAGGAGAGACCTGGCACATGGTATTCACCACTGAGGgtcagcttct ... gataaaacagGGGAAGTCCCATATAGAGAGGGGCAATCTATTGGTGTGATTCCGGATGGTA
EST: gi|349821990|gb|FQ408319.1|FQ408319
EST:     TGGAGACGATGCTCCAGGAGAGACCTGGCACATGGTATTCACCACTGAGG                         GGGAAGTCCCATATAGAGAGGGGCAATCTATTGGTGTGATTCCGGATGGTA
genomic: TGGAGACGATGCTCCAGGAGAGACCTGGCACATGGTATTCACCACTGAGGgtcagcttct ... gataaaacagGGGAAGTCCCATATAGAGAGGGGCAATCTATTGGTGTGATTCCGGATGGTA
EST: gi|349825115|gb|FQ415662.1|FQ415662
EST:     TGGAGACGATGCTCCAGGAGAGACCTGGCACATGGTATTCACCACTGAGG                         GGGAAGTCCCATATAGAGAGGGGCAATCTATTGGTGTGATTCCGGATGGTA
genomic: TGGAGACGATGCTCCAGGAGAGACCTGGCACATGGTATTCACCACTGAGGgtcagcttct ... gataaaacagGGGAAGTCCCATATAGAGAGGGGCAATCTATTGGTGTGATTCCGGATGGTA
EST: gi|351031903|gb|FQ460160.1|FQ460160
EST:     TGGAGACGATGCTCCAGGAGAGACCTGGCACATGGTATTCACCACTGAGG                         GGGAAGTCCCATATAGAGAGGGGCAATCTATTGGTGTGATTCCGGATGGTA
genomic: TGGAGACGATGCTCCAGGAGAGACCTGGCACATGGTATTCACCACTGAGGgtcagcttct ... gataaaacagGGGAAGTCCCATATAGAGAGGGGCAATCTATTGGTGTGATTCCGGATGGTA
EST: gi|351040458|gb|FQ434591.1|FQ434591
EST:     TGGAGACGATGCTCCAGGAGAGACCTGGCACATGGTATTCACCACTGAGG                         GGGAAGTCCCATATAGAGAGGGGCAATCTATTGGTGTGATTCCGGATGGTA
genomic: TGGAGACGATGCTCCAGGAGAGACCTGGCACATGGTATTCACCACTGAGGgtcagcttct ... gataaaacagGGGAAGTCCCATATAGAGAGGGGCAATCTATTGGTGTGATTCCGGATGGTA
EST: gi|351052706|gb|FQ453814.1|FQ453814
EST:     TGGAGACGATGCTCCAGGAGAGACCTGGCACATGGTATTCACCACTGAGG                         GGGAAGTCCCATATAGAGAGGGGCAATCTATTGGTGTGATTCCGGATGGTA
genomic: TGGAGACGATGCTCCAGGAGAGACCTGGCACATGGTATTCACCACTGAGGgtcagcttct ... gataaaacagGGGAAGTCCCATATAGAGAGGGGCAATCTATTGGTGTGATTCCGGATGGTA
EST: gi|349826752|gb|FQ418843.1|FQ418843
EST:     TGGAGACGATGCTCCAGGAGAGACCTGGCACATGGTATTCACCACTGAGG                         GGGAAGTCCCATATAGAGAGGGGCAATCTATTGGTGTGATTCCGGATGGTA
genomic: TGGAGACGATGCTCCAGGAGAGACCTGGCACATGGTATTCACCACTGAGGgtcagcttct ... gataaaacagGGGAAGTCCCATATAGAGAGGGGCAATCTATTGGTGTGATTCCGGATGGTA
EST: gi|349817775|gb|FQ407764.1|FQ407764
EST:     TGGAGACGATGCTCCAGGAGAGACCTGGCACATGGTATTCACCACTGAGG                         GGGAAGTCCCATATAGAGAGGGGCAATCTATTGGTGTGATTCCGGATGGTA
genomic: TGGAGACGATGCTCCAGGAGAGACCTGGCACATGGTATTCACCACTGAGGgtcagcttct ... gataaaacagGGGAAGTCCCATATAGAGAGGGGCAATCTATTGGTGTGATTCCGGATGGTA
EST: gi|352794268|gb|FQ479510.1|FQ479510
EST:     TGGAGACGATGCTCCAGGAGAGACCTGGCACATGGTATTCACCACTGAGG                         GGGAAGTCCCATATAGAGAGGGGCAATCTATTGGTGTGATTCCGGATGGTA
genomic: TGGAGACGATGCTCCAGGAGAGACCTGGCACATGGTATTCACCACTGAGGgtcagcttct ... gataaaacagGGGAAGTCCCATATAGAGAGGGGCAATCTATTGGTGTGATTCCGGATGGTA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AGACCCAAGAATCCTTACATCGGAAAATGTCTCCTCAACACCAAGATTACTGGAGACGATGCTCCAGGAGAGACCTGGCACATGGTATTCACCACTGAGGgtcagcttctttaccatgcctatctctcttgataattgaaggatttcttttttcttttttcttttataattttttagtagttgtgaataaattatgggattattcttgcatttgattgttgcgttggataatctgataaaacag

- - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGGAGA