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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGTGGTTATGGTGGCCCAGATAATGTCCTCACTGATGAGTCAGAACTTCAGCAACATCAAAAACTTGAGAAACTTTACATATCAACCCGTGCTGGGAAGgttacacaatgcctcttacttctatgtaactgtcctgtatatttcttcttaacctttgtatatccttttctctcactag

Basic information

species Vitis vinifera
transcript Vv18s0001g13530.t01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv18s0001g13530.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA04G01100.2 (Glycine max), 5'ss of exon 2
TGGTGGTTATGGTGGCCCAGATAATGTCCTCACTGATGAGTCAGAACTTCAGCAACATCAAAAACTTGAGAAACTTTACATATCAACCCGTGCTGGGAAGgttacacaatgcctct-tacttctatgtaactgtcctgtatatttcttcttaacctttgtatatccttttctctcactag--------------------
||| || ||||| ||  |||||||| |  | |||||||||  ||| |||||||||||||| ||||||||||| |||||||||||||| |||||||| ||||||||    |   ||| ||| |       | | |  | | | |||   ||  || | ||     ||| ||       ||                     
TGGGGGATATGGAGGATCAGATAATATGGTTACTGATGAGGTAGAGCTTCAGCAACATCAGAAACTTGAGAAGCTTTACATATCAACACGTGCTGGAAAGgttacttggtttttctgtacctaccctctatttttgtttgtgttttacctccacttatgctctccctgtttggctgataatgaaatatattgtttttcag

upper sequence: Vv18s0001g13530.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA06G01120.2 (Glycine max), 5'ss of exon 2
TGGTGGTTATGGTGGCCCAGATAATGTCCTCACTGATGAGTCAGAACTTCAGCAACATCAAAAACTTGAGAAACTTTACATATCAACCCGTGCTGGGAAGgttacacaatgcctct-tacttctatgtaactgtcctgtatatttcttcttaacctttgtatatccttttctctcactag--------------------
||| || ||||| ||  |||||||| |  | |||||||||  ||| |||||||||||||| ||||||||||| |||||||||||||| |||||||| |||||||     |   ||| |||         | | |  | | | |||  |||  || | |      ||| ||       ||                     
TGGGGGATATGGAGGTTCAGATAATATGGTTACTGATGAGGTAGAGCTTCAGCAACATCAGAAACTTGAGAAGCTTTACATATCAACACGTGCTGGAAAGgttaattggtttttctgtaccaaccctctatttttgtttgtgttttatctctacttataccctccctgtttggctgataatgaaatatattgtttttcag

upper sequence: Vv18s0001g13530.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA12G04210.1 (Glycine max), 5'ss of exon 2
TGGTGGTTATGGTGGCCCAGATAATGTCCTCACTGATGAGTCAGAACTTCAGCAACATCAAAAACTTGAGAAACTTTACATATCAACCCGTGCTGGGAAGgttacacaatgcctcttacttctatgtaactgtcctgtatatttcttcttaacctttgtatatccttttctctc---actag------------------------------
||| |||||||| ||  ||||||||||  | |||||||     || || |||| ||| || ||||||||||||||||| ||||| || ||||| |||||||||||    |  || | | ||| || |   |||  |    |||| |  || |  |   | ||||| ||   | |    ||                                
TGGCGGTTATGGAGGTTCAGATAATGTGGTTACTGATGGAGTGGAGCTCCAGCTACACCAGAAACTTGAGAAACTTTATATATCGACACGTGCGGGGAAGgttacctggt-tctttgatttcaat-tctttgtttt---catttatagttgatgtcgatttatcccttctcccctaggctgatcatagctccaaatccaattgtgttttcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|77585677|gb|DV221928.1|DV221928
EST:     AGCAACATCAAAAACTTGAGAAACTTTACATATCAACCCGTGCTGGGAAG                         CATTTCCAAAGGGATATTGTCCGTGGTGTGGAAGGTTTCATAGTTACTGGG
genomic: AGCAACATCAAAAACTTGAGAAACTTTACATATCAACCCGTGCTGGGAAGgttacacaat ... ctctcactagCATTTCCAAAGGGATATTGTCCGTGGTGTGGAAGGTTTCATAGTTACTGGG
EST: gi|161714010|gb|FC064085.1|FC064085
EST:     AGCAACATCAAAAACTTGAGAAACTTTACATATCAACCCGTGCTGGGAAG                         CATTTCCAAAGGGATATTGTCCGTGGTGTGGAAGGTTTCATAGTTACTGGG
genomic: AGCAACATCAAAAACTTGAGAAACTTTACATATCAACCCGTGCTGGGAAGgttacacaat ... ctctcactagCATTTCCAAAGGGATATTGTCCGTGGTGTGGAAGGTTTCATAGTTACTGGG