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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAATGACTGGCACTGGGGCTCCTAATATGCCAAAAAGTTACTCCTTGAATATGTTCAAAGATTTTGTTCCTATGTGTGTTTTTTCTGAGACAAATCAAGgtaagagtcatgatttttgtttaaactatgtaatcttatatatttgttttagtgaacttttctatagtttattttgtaaattcctgttacaagtccattc...

Basic information

species Vitis vinifera
transcript Vv18s0001g13370.t01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv18s0001g13370.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: LOC_Os05g43450.1 (Oryza sativa), 5'ss of exon 2
GAAATGACTGGCACTGGGGCTCCTAATATGCCAAAAAGTTACTCCTTGAATATGTTCAAAGATTTTGTTCCTATGTGTGTTTTTTCTGAGACAAATCAAGgtaagagtcatgatttttgttt---aaactatgtaatcttatatatttgttttagtgaacttttctatagtttattttgtaaattcctgttacaagtccattc-
|| ||| ||   |||    ||   ||||  ||||| ||||||||||||||||||| ||| |||||||| || ||||||||||| |||||| | || ||||||| |||||    |    | ||   ||  |||      |    | ||| | |  ||  |  || ||||      |  |  | ||   | ||||  || | |   
GAGATGGCTCAAACTAACACTGGCAATACACCAAAGAGTTACTCCTTGAATATGTCCAAGGATTTTGTACCAATGTGTGTTTTCTCTGAGTCTAACCAAGgtaggagtccaattcccagcttgttaacttatactgcttgcgttctttttctctgtacatattactat----cctgatagacatagtttttactcgttcctgta

upper sequence: Vv18s0001g13370.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: LOC_Os01g56550.3 (Oryza sativa), 5'ss of exon 2
GAAATGACTGGCACTGGGGCTCCTAATATGCCAAAAAGTTACTCCTTGAATATGTTCAAAGATTTTGTTCCTATGTGTGTTTTTTCTGAGACAAATCAAGgtaagagt--catgatttttgtttaaactatgtaatcttatatatttgttttagtgaacttttctatagtttattttgtaaattcctgttacaagtccattc
|| ||| ||   || ||   |   ||||  ||||| |||||||||||||| |||||||| |||||||| || |||||||| ||||||||  | || |||||||||| |  || | ||| | ||||       |  |   || ||||| |  |  |||  | |   |   | |   | | || |||   |      |      
GAGATGGCTCAAACAGGCAATGGCAATACACCAAAGAGTTACTCCTTGAACATGTTCAAGGATTTTGTGCCAATGTGTGTCTTTTCTGAATCCAACCAAGgtaagaataccaggctttctctttatttacgatgcttgcatgtatttctcctt-tgatatgtgagactttatcactagcaatttctcatggttgatgtgca-

upper sequence: Vv18s0001g13370.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GRMZM2G060284_T02 (Zea mays), 5'ss of exon 2
GAAATGACTGGCACTGGGGCTCCTAATATGCCAAAAAGTTACTCCTTGAATATGTTCAAAGATTTTGTTCCTATGTGTGTTTTTTCTGAGACAAATCAAGgtaagagtcatgatttttgtt-taaactatgtaatcttatatatttgttttagtgaacttttctatagtttattttgtaaattcctgttacaagtccattc-
||| || ||   |||    |    ||||  || || || ||||| |||||||||||||||||||| ||||||||||||||||| || ||  | || ||||||| ||  ||   |    | | || |||   |||  | |   || | | |   |||        | | |||| |    | |  | |        |   ||| 
GAATTGGCTCAAACTAACACCGGGAATACACCTAAGAGCTACTCTTTGAATATGTTCAAAGATTTCGTTCCTATGTGTGTTTTCTCCGAATCTAACCAAGgtaggatccagattcacagctctacactgcttaaa-tgaagcatctctatctatgattggaatca-attttactgcccagagacattacttgcctttgttct

upper sequence: Vv18s0001g13370.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GRMZM2G049091_T01 (Zea mays), 5'ss of exon 2
GAAATGACTGGCACTGGGGCTCCTAATATGCCAAAAAGTTACTCCTTGAATATGTTCAAAGATTTTGTTCCTATGTGTGTTTTTTCTGAGACAAATCAAGgtaagagtcatgatttttgtttaaactatgtaatcttatatatttgttttagtgaacttttctat---agtttattttgtaaattcctgttacaagtccattc
||  || |    |||    ||   ||||  || || || ||||| |||||||||||||||||||| || |||||||||||||| || ||  | || ||||||| || ||| ||||     ||    | | | | ||| |||| | | || |||| ||   |  |    |||||| |    | |  ||            ||| 
GAGTTGGCACAAACTAACACTGGGAATACACCTAAGAGCTACTCTTTGAATATGTTCAAAGATTTCGTGCCTATGTGTGTTTTCTCCGAATCTAACCAAGgtaggattca-gattcacagtttttttttatcagctt-tatact-gcttaagtgcacgcctgaaatcaagtttactgcccagagccccagccaggcgtgattt

upper sequence: Vv18s0001g13370.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA04G03030.2 (Glycine max), 5'ss of exon 2
GAAATGACTGGCACTGGGGCTCCTAATATGCCAAAAAGTTACTCCTTGAATATGTTCAAAGATTTTGTTCCTATGTGTGTTTTTTCTGAGACAAATCAAGgtaagagtcatgatttttgtttaaactatgtaatcttatatatttgtt--ttagtgaacttttctatagt-ttattttgtaaattcctgttacaagtccattc-
|| ||| ||||| | |  |||   ||||||||||||| ||| || ||||||||||| ||||| ||||||||||||||||| || || ||||| |  |||||| ||| || |  | |  | || |     ||| |  ||  | ||||||  | | |     |||| | | | | |  |  |  |     |  |  | | ||| | 
GAGATGGCTGGCTCCGAAGCTGTGAATATGCCAAAAACTTATTCATTGAATATGTTTAAAGACTTTGTTCCTATGTGTGTCTTCTCCGAGACTAGCCAAGgtgagaatcgtactctcaggtttatg---gtagttgtaattttttgttcatcaatagcagtttcaaaattatcaactattggagcaaggacatga-tacatcca

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|34543665|gb|CF511897.1|CF511897
EST:     TATGTTCAAAGATTTTGTTCCTATGTGTGTTTTTTCTGAGACAAATCAAG                         GTAGAGTTGCAATGGAAGGGAAAGTAGAGCATAAATTTGACATGAAGCCCC
genomic: TATGTTCAAAGATTTTGTTCCTATGTGTGTTTTTTCTGAGACAAATCAAGgtaagagtca ... tctttttcagGTAGAGTTGCAATGGAAGGGAAAGTAGAGCATAAATTTGACATGAAGCCTC
EST: gi|110712491|gb|EE090172.1|EE090172
EST:     TATGTTCAAAGATTTTGTTCCTATGTGTGTTTTTTCTGAGACAAATCAAG                         GTAGAGTTGCAATGGAAGGGAAAGTAGAGCATAAATTTGACATGAAGCCCC
genomic: TATGTTCAAAGATTTTGTTCCTATGTGTGTTTTTTCTGAGACAAATCAAGgtaagagtca ... tctttttcagGTAGAGTTGCAATGGAAGGGAAAGTAGAGCATAAATTTGACATGAAGCCTC
EST: gi|30302977|gb|CB979771.1|CB979771
EST:     TATGTTCAAAGATTTTGTTCCTATGTGTGTTTTTTCTGAGACAAATCAAG                         GTAGAGTTGCAATGGAAGGGAAAGTAGAGCATAAATTTGACATGAAGCCCC
genomic: TATGTTCAAAGATTTTGTTCCTATGTGTGTTTTTTCTGAGACAAATCAAGgtaagagtca ... tctttttcagGTAGAGTTGCAATGGAAGGGAAAGTAGAGCATAAATTTGACATGAAGCCTC
EST: gi|33410257|gb|CF215884.1|CF215884
EST:     TATGTTCAAAGATTTTGTTCCTATGTGTGTTTTTTCTGAGACAAATCAAG                         GTAGAGTTGCAATGGAAGGGAAAGTAGAGCATAAATTTGACATGAAGCCCC
genomic: TATGTTCAAAGATTTTGTTCCTATGTGTGTTTTTTCTGAGACAAATCAAGgtaagagtca ... tctttttcagGTAGAGTTGCAATGGAAGGGAAAGTAGAGCATAAATTTGACATGAAGCCTC
EST: gi|110701992|gb|EE080196.1|EE080196
EST:     TCAAAGATTTTGTTCCTATGTGTGTTTTTTCTGAGACAAATCAAG                         GTAGAGTTGCAATGGAAGGGAAAGTAGAGCATAAATTTGACATGAAGCCCC
genomic: TCAAAGATTTTGTTCCTATGTGTGTTTTTTCTGAGACAAATCAAGgtaagagtca ... tctttttcagGTAGAGTTGCAATGGAAGGGAAAGTAGAGCATAAATTTGACATGAAGCCTC
EST: gi|71876173|gb|DT025228.1|DT025228
EST:     TATGTTCAAAGATTTTGTTCCTATGTGTGTTTTTTCTGAGACAAATCAAG                         GTAGAGTTGCAATGGAAGGGAAAGTAGAGCATAAATTTGACATGAAGCCCC
genomic: TATGTTCAAAGATTTTGTTCCTATGTGTGTTTTTTCTGAGACAAATCAAGgtaagagtca ... tctttttcagGTAGAGTTGCAATGGAAGGGAAAGTAGAGCATAAATTTGACATGAAGCCTC
EST: gi|33410334|gb|CF215961.1|CF215961
EST:     TATGTTCAAAGATTTTGTTCCTATGTGTGTTTTTTCTGAGACAAATCAAG                         GTAGAGTTGCAATGGAAGGGAAAGTAGAGCATAAATTTGACATGAAGCCCC
genomic: TATGTTCAAAGATTTTGTTCCTATGTGTGTTTTTTCTGAGACAAATCAAGgtaagagtca ... tctttttcagGTAGAGTTGCAATGGAAGGGAAAGTAGAGCATAAATTTGACATGAAGCCTC
EST: gi|110713762|gb|EE089967.1|EE089967
EST:     TATGTTCAAAGATTTTGTTCCTATGTGTGTTTTTTCTGAGACAAATCAAG                         GTAGAGTTGCAATGGAAGGGAAAGTAGAGCATAAATTTGACATGAAGCCCC
genomic: TATGTTCAAAGATTTTGTTCCTATGTGTGTTTTTTCTGAGACAAATCAAGgtaagagtca ... tctttttcagGTAGAGTTGCAATGGAAGGGAAAGTAGAGCATAAATTTGACATGAAGCCTC
EST: gi|30303033|gb|CB979827.1|CB979827
EST:     TATGCTGANAGATTTTGTTCCTATGTGTGTTTTTTCTGAGACAAATCAAG                         GTAGAGTTGCAATGGAAGGGAAAGTAGAGCATAAATTTGACATGAAGCCCC
genomic: TATGTTCAAAGATTTTGTTCCTATGTGTGTTTTTTCTGAGACAAATCAAGgtaagagtca ... tctttttcagGTAGAGTTGCAATGGAAGGGAAAGTAGAGCATAAATTTGACATGAAGCCTC
EST: gi|110702596|gb|EE081122.1|EE081122
EST:     TATGTTCAAAGATTTTGTTCCTATGTGTGTTTTTTCTGAGACAAATCAAG                         GTAGAGTTGCAATGGAAGGGAAAGTAGAGCATAAATTTGACATGAAGCCCC
genomic: TATGTTCAAAGATTTTGTTCCTATGTGTGTTTTTTCTGAGACAAATCAAGgtaagagtca ... tctttttcagGTAGAGTTGCAATGGAAGGGAAAGTAGAGCATAAATTTGACATGAAGCCTC