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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGCAAACACAAGAGTCATGCCAATGGCATTGTTCTTACCTACAAGTACTTCAAGTACACTTCTGGATATATACATCACTGTACCATCAGGAATTTGGTAgtacgtgcatctttttatctcacaacctttaataaattttcatggtttgtcggttctcacttaaaatttaaccgtatggaacttaacaactgaattactatcaatgcag

Basic information

species Vitis vinifera
transcript Vv18s0001g13330.t01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv18s0001g13330.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA06G03100.3 (Glycine max), 5'ss of exon 3
TGGCAAACACAAGAGTCATGCCAATGGCATTGTTCTTACCTACAAGTACTTCAAGTACACTTCTGGATATATACATCACTGTACCATCAGGAATTTGGTAgtacgtgcatctttttatctcaca-acctttaataaattttcatggtttgtcggttctcacttaaaatttaaccgtatggaacttaacaactgaattactatcaatgcag
  |  ||  |||  | || ||  ||||| || | |||||||||||||||||||| ||||| ||||| || ||||||||||| ||  |    |||||||  ||  ||||  |  ||  |||  |  | || | |  | ||||  |   ||    |   |    ||| |  || |         |||  ||    |||||    ||      
CAGTGAATTCAAATGGCAAGCTCATGGCTTTTTCCTTACCTACAAGTACTTCAATTACACCTCTGGCTACATACATCACTGCACTGTTCACAATTTGGAGgtgtgtgccgcacttgttcttgcctagctctcactattttttttcactttatagcaattgggtaacacctacct--------cttctcattgcaattatatacag-----