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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAAGCAAGATCGCCTGCAATCGCCTCCAGAAAGAGCTGGTGGAATGGCAGGTCAACCCTCCTGCGGGATTCAAGCATAAAGTCACAGATAATCTACAGAGgtttcgttttcgattgattttgttttttattttgatttgttttttatttttttattttttaaaaatggattgttttgatttaaag

Basic information

species Vitis vinifera
transcript Vv18s0001g13180.t01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv18s0001g13180.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: LOC_Os03g47770.1 (Oryza sativa), 5'ss of exon 2
TAAGCAAGATCGCCTGCAATCGCCTCCAGAAAGAGCTGGTGGAATGGCAGGTCAACCCTCCTGCGGGATTCAAGCATAAAGTCACAGATAATCTACAGAGgtttcgttttcgattgattttgttt--tttattttgatttgttttttatttttttattttttaaaaatggattgttttgatttaaag-------------
| ||||||||||| ||||| || || ||||| ||||| | ||| |||||||||||||||||  | || |||||||| || ||||| || ||||| |||||||  |     |  |       |     |  |     |   | ||||| |  ||     |||      | |  | |||   |||  |              
TGAGCAAGATCGCGTGCAACCGGCTGCAGAAGGAGCTCGCGGAGTGGCAGGTCAACCCTCCCTCCGGCTTCAAGCACAAGGTCACCGACAATCTCCAGAGgtgaccccccccctcccccgcgaccactccaaacccacgcggtttttgtccttgccgctttcgcgtttcgtctctttccctttcgattcagatgaaatcg

upper sequence: Vv18s0001g13180.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GRMZM2G116840_T03 (Zea mays), 5'ss of exon 2
TAAGCAAGATCGCCTGCAATCGCCTCCAGAAAGAGCTGGTGGAATGGCAGGTCAACCCTCCTGCGGGATTCAAGCATAAAGTCACAGATAATCTACAGAGgtttcgttttcgattgattttgttttttattttgatttgttttttatt--tttttattttttaaaaatggattgttttgatttaaag-------------
| ||||||||||||||||  ||||| ||||| ||||| | ||| |||||||||||||| || ||||| |||||||| |  ||||| ||  | || |||||||  |  |      |  |     ||  |||     ||  |          |   |  | |           | | ||   ||    |             
TGAGCAAGATCGCCTGCAGCCGCCTGCAGAAGGAGCTCGCGGAGTGGCAGGTCAACCCGCCCGCGGGCTTCAAGCACAGGGTCACCGACGACCTCCAGAGgtgcccctccgccatcgtcgcccttcctatcccctttcctcagcaggcaatccctgctgtgcggggtctcttagattcctttctccgtggctccgtgctt

upper sequence: Vv18s0001g13180.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: AT1G75440.1 (Arabidopsis thaliana), 5'ss of exon 2
TAAGCAAGATCGCCTGCAATCGCCTCCAGAAAGAGCTGGTGGAATGGCAGGTCAACCCTCCTGCGGGATTCAAGCATAAAGTCACAGATAATCTACAGAGgt----ttcgttttcgattgattttgttttttattttgatttgttttttatttttttattttttaaaaatggattgttttgatttaaag
| || ||||||||    ||||| || ||||||||||| |||||||||||| | || || ||| | || ||||| || |||||||| |||||||| || ||||    |  |  || | || | ||| || ||  ||  || |  | |   ||||    ||||| | |      |||    || |||  ||
TGAGTAAGATCGCGACTAATCGTCTTCAGAAAGAGCTTGTGGAATGGCAGATGAATCCACCTACTGGTTTCAAACACAAAGTCACTGATAATCTCCAAAGgtaaattatgaattaggtttactttattctt-gttgagaatcatataagatttagaaattttgtgatgtcaaatt-caatggtttgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32248401|gb|CD714220.1|CD714220
EST:     GTCAACCCTCCTGCGGGATTCAAGCATAAAGTCACAGATAATCTACAGAG                         ATGGGTGATCGAAGTCAACGGAGCTCCGGGAACTCTGTACGCCAACGAATC
genomic: GTCAACCCTCCTGCGGGATTCAAGCATAAAGTCACAGATAATCTACAGAGgtttcgtttt ... tgatttaaagATGGGTGATCGAAGTCAACGGAGCTCCGGGAACTCTGTACGCCAACGAATC
EST: gi|71874807|gb|DT023862.1|DT023862
EST:     GTCAACCCTCCTGCGGGATTCAAGCATAAAGTCACAGATAATCTACAGAG                         ATGGGTGATCGAAGTCAACGGAGCTCCGGGAACTCTGTACGCCAACGAATC
genomic: GTCAACCCTCCTGCGGGATTCAAGCATAAAGTCACAGATAATCTACAGAGgtttcgtttt ... tgatttaaagATGGGTGATCGAAGTCAACGGAGCTCCGGGAACTCTGTACGCCAACGAATC
EST: gi|32267803|gb|CD716962.1|CD716962
EST:     GTCAACCCTCCTGCGGGATTCAAGCATAAAGTCACAGATAATCTACAGAG                         ATGGGTGATCGAAGTCAACGGAGCTCCGGGAACTCTGTACGCCAACGAATC
genomic: GTCAACCCTCCTGCGGGATTCAAGCATAAAGTCACAGATAATCTACAGAGgtttcgtttt ... tgatttaaagATGGGTGATCGAAGTCAACGGAGCTCCGGGAACTCTGTACGCCAACGAATC