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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGATGTGGAGGAGCTTCAAGCTGTGGAAGCATTTCGACAGGCGCTCATTTCCGATGACTTGCTTCCCGATAGACATGATGACTATCATATGCTCTTGAGgtcttacaatgctttgcctttttcctgattttggctacttctctacagagcttcattctcagggattgccatctttgcag

Basic information

species Vitis vinifera
transcript Vv18s0001g12950.t01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv18s0001g12950.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA14G07850.1 (Glycine max), 5'ss of exon 2
GAGATGTGGAGGAGCTTCAAGCTGTGGAAGCATTTCGACAGGCGCTCATTTCCGATGACTTGCTTCCCGATAGACATGATGACTATCATATGCTCTTGAGgtcttacaatgctttgcctttttcctgattttggctacttctctacagagcttcattctcagggattgccatctttgcag----------------------------
|||||||  ||||||||||||| ||||| | ||||||||||||||| || |  ||| ||||| | ||    ||||||||||||||||| | | |  ||||||       | ||   |||| || || || || |  |  | ||| ||||   |   |   || |||  | |    ||||                             
GAGATGTTAAGGAGCTTCAAGCAGTGGATGAATTTCGACAGGCGCTTATATTGGATAACTTGTTGCCACCGAGACATGATGACTATCACACGTTACTGAGgt-------tactgccccttattacttatatttga-atatatctgcagaagatagattatagtgatcacaactgatgcatcatgttaatttgttatgcctttagtaac

upper sequence: Vv18s0001g12950.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA06G03300.1 (Glycine max), 5'ss of exon 2
GAGATGTGGAGGAGCTTCAAGCTGTGGAAGCATTTCGACAGGCGCTCATTTCCGATGACTTGCTTCCCGATAGACATGATGACTATCATATGCTCTTGAGgtcttacaatgctttgcctttttcctgattttggctacttctctacagagcttcattctcaggg-attgccatctttgcag
|||||||  | || |||||||| ||||| |||||||||||||| ||  | |  ||| || |||||||    | ||||||||||||||||||||| |||||||   | |      |  ||  ||  || ||      || | |  | | || || |  || |    |      |  ||||||
GAGATGTTAAAGACCTTCAAGCAGTGGATGCATTTCGACAGGCACTAGTGTTAGATAACATGCTTCCTCCAATACATGATGACTATCATATGCTATTGAGgttacaaaccctccttactagttagtggttacattcacatatggatatagtttaaaactgaattcaacatatttcttgcag

upper sequence: Vv18s0001g12950.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA04G03230.1 (Glycine max), 5'ss of exon 1
GAGATGTGGAGGAGCTTCAAGCTGTGGAAGCATTTCGACAGGCGCTCATTTCCGATGACTTGCTTCCCGATAGACATGATGACTATCATATGCTCTTGAGgtcttacaatgctttgcctttttcctgattttggctacttctctacagagct-tcattctcagggattgccatctttgcag-------------------------------
| |||||  | ||  ||||||| ||||| |||||||||||||| ||  | |  ||| |||||||| |    | ||||||||||||||||||||| |||||||  |||||  |  | | |  |   |  |  | | ||| |    | |  | | |  ||        ||    | | |  ||                               
GGGATGTTAAAGACATTCAAGCAGTGGATGCATTTCGACAGGCACTTGTGTTAGATAACTTGCTTACTCCAATACATGATGACTATCATATGCTATTGAGgt--tacaa-accctccttactatttattagtagttacattcacatatggatatggtttatttaccttattgtatgtatagtttaaaactgaattcaacatatttcatgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33407754|gb|CF213381.1|CF213381
EST:     TCCGATGACTTGCTTCCCGATAGACATGATGACTATCATATGCTCTTGAG                         ATTTTTGAAAGCCAGGAAGTTTGATATGGAAAAGGCGAAGCACATGTGGAC
genomic: TCCGATGACTTGCTTCCCGATAGACATGATGACTATCATATGCTCTTGAGgtcttacaat ... atctttgcagATTTTTGAAAGCCAGGAAGTTTGATATGGAAAAGGCGAAGCACATGTGGAC