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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGATGATATCCAGATGGGTAAACGGGAGGAAACTCGTGATGTTGCTCGTGTGCTGTCTTGTTATAATGACATCATTATGGCACGTGTTTTTGCTCATCAGgtatgctggtgagttttttaatgtttggtagtactcagatttcaattggtcttgcatatgtgtatttaaagaaggtagatatattccacttctgttgcag

Basic information

species Vitis vinifera
transcript Vv18s0001g12780.t01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv18s0001g12780.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: LOC_Os02g47590.1 (Oryza sativa), 5'ss of exon 2
AGATGATATCCAGATGGGTAAACGGGAGGAAACTCGTGATGTTGCTCGTGTGCTGTCTTGTTATAATGACATCATTATGGCACGTGTTTTTGCTCATCAGgtatgctggtgagttttttaatgtttggtagtactcagatttcaattggtcttgcatatgtgtatttaaagaaggtaga-tatattccacttctgt-tgcag
 ||||||||||||||||| || || || || || |||||||||||||||||||| ||| | ||||||||||||||||||||  | ||||||||||| || ||||| |  | ||    |   | ||  ||   |      |  |         | | | |    |  || ||||  ||   || |    |  ||||  |||  
TGATGATATCCAGATGGGCAAGCGTGAAGAGACCCGTGATGTTGCTCGTGTGCTTTCTGGATATAATGACATCATTATGGCCAGGGTTTTTGCTCACCAAgtatgatcataaggccctggcttttctgtttgatctgtttaccggcacaatctacttgtacacagatacagaatttaccctacacataaaatctgcatgc--

upper sequence: Vv18s0001g12780.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GRMZM2G046748_T02 (Zea mays), 5'ss of exon 3
AGATGATATCCAGATGGGTAAACGGGAGGAAACTCGTGATGTTGCTCGTGTGCTGTCTTGTTATAATGACATCATTATGGCACGTGTTTTTGCTCATCAGgtatgctggtgagttttttaat---gtttggtagtactcagatttcaattggtcttgc--atatgtgtatttaaagaaggtagatatattccacttctgttgcag
|||||||||||||||||| || || ||||| ||||||||||||||||| || || ||| | |||||||| |||||||||||  | || |||||||||||||| || |  |||||| | | ||   | ||  |  |       |||  |      |  |  | | |   || |||    | | | |   ||  || | | |     
AGATGATATCCAGATGGGCAAGCGTGAGGAGACTCGTGATGTTGCTCGAGTACTTTCTGGCTATAATGATATCATTATGGCCAGGGTCTTTGCTCATCAGgtttggtcatgagttgtatgattaagatttcttttttgtgtttttttaccaacataaccaacaaggacatataatctggatcgtttctttttacatattt-----

upper sequence: Vv18s0001g12780.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GRMZM2G050371_T01 (Zea mays), 5'ss of exon 2
AGATGATATCCAGATGGGTAAACGGGAGGAAACTCGTGATGTTGCTCGTGTGCTGTCTTGTTATAATGACATCATTATGGCACGTGTTTTTGCTCATCAGgtatgctggtgagttttttaatgtttggtagtactcagatttcaattggtcttgc-atatgtgtatttaaagaaggtagatatatt---ccacttctgttgcag----
|||||||||||||||||| ||||| ||||| ||||||||||||||| | || || ||| | ||||||||||||||||||||  | || |||||||| || ||||| |  ||||||   ||||      ||  | |    ||| |  |||||||   |      ||   ||  | || | |||   |    || || | ||        
AGATGATATCCAGATGGGCAAACGTGAGGAGACTCGTGATGTTGCTAGAGTACTTTCTGGCTATAATGACATCATTATGGCTAGGGTCTTTGCTCACCAAgtatggtcatgagttgcataat------taagatttc--ttttatgtggtctttttaccaacataaccaacaagggcacataacctggatcatttttctttttacata

upper sequence: Vv18s0001g12780.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GRMZM2G349547_T01 (Zea mays), 5'ss of exon 2
AGATGATATCCAGATGGGTAAACGGGAGGAAACTCGTGATGTTGCTCGTGTGCTGTCTTGTTATAATGACATCATTATGGCACGTGTTTTTGCTCATCAGgtatgctggtgagttttttaat---gtttggtagtactcagatttcaattggtcttgcatatgtgtatttaaagaaggtagatatattccacttctgttgcag
  |||||||||||||||| || || ||||| ||||||||||||||| | || || ||| | ||||||||||||||||||||  | || |||||||| || ||||| |  ||||||   ||||   | ||  |  ||    |  ||        | |    |    | |  | | ||  | |||  |||   ||| |     | 
--ATGATATCCAGATGGGCAAGCGTGAGGAGACTCGTGATGTTGCTAGAGTACTTTCTGGCTATAATGACATCATTATGGCTAGGGTCTTTGCTCACCAAgtatggtcatgagttgcataattaagatttcttttatgtggtctttttaccaacataaccaacaatgtc-acataacctggat-catttttctttttacata-

upper sequence: Vv18s0001g12780.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GRMZM2G062142_T01 (Zea mays), 5'ss of exon 4
AGATGATATCCAGATGGGTAAACGGGAGGAAACTCGTGATGTTGCTCGTGTGCTGTCTTGTTATAATGACATCATTATGGCACGTGTTTTTGCTCATCAGgtatgctggtgagttttttaatgtttggtagtactcagatttcaattggtcttgcatatgtgtatttaaagaaggtagatatatt---ccacttctgttgcag-----
|||||||||||||||||| || || ||||| ||||||||| ||||| | || || ||| | ||||||||||||||||||||  | || |||||||| || ||||| |  ||||||   ||||      ||  | |    ||| |  |||||||  |      ||   ||  |  | | |||   |    || || | ||         
AGATGATATCCAGATGGGCAAGCGTGAGGAGACTCGTGATTTTGCTAGAGTACTTTCTGGCTATAATGACATCATTATGGCTAGGGTCTTTGCTCACCAAgtatggtcatgagttgcataat------taagatttc--ttttatgtggtcttttaccaacataaccaacaacagcacataacctggatcatttttctttttacatat

upper sequence: Vv18s0001g12780.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA04G03280.1 (Glycine max), 5'ss of exon 2
AGATGATATCCAGATGGGTAAACGGGAGGAAACTCGTGATGTTGCTCGTGTGCTGTCTTGTTATAATGACATCATTATGGCACGTGTTTTTGCTCATCAGgtatgctggtgagttttttaatgtttggtagtactcagatttcaattggtc-ttgcatatgtgtatttaaagaaggtagatatattccacttctgt-tgcag--
 ||||||||||| ||||| || || ||||| ||||||||  ||||||||||  ||||| | |||||||||||||||||||| ||||||||||||||| ||||||||||||||     | |||||   |   ||||   |||||| |||| | ||| |     ||   | | |   || |  |      | || | | ||||   
TGATGATATCCAAATGGGCAAGCGAGAGGAGACTCGTGACATTGCTCGTGTTTTGTCTCGCTATAATGACATCATTATGGCTCGTGTTTTTGCTCATAAGgtatgctggtga-ccagtgaatgt---gagttacttgtatttcatttggccattgtaccgcagttactcatgtttgtggtcagtgaagaattatatctgcatct

upper sequence: Vv18s0001g12780.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA06G03360.1 (Glycine max), 5'ss of exon 2
AGATGATATCCAGATGGGTAAACGGGAGGAAACTCGTGATGTTGCTCGTGTGCTGTCTTGTTATAATGACATCATTATGGCACGTGTTTTTGCTCATCAGgtatgctggtgagttttttaatgt---ttggtagtactcagatttcaattggtct-tgcatatgtgtatttaaagaaggtagatatattccacttctgttgcag
 ||||| ||||| ||||| || || ||||| ||||||||  ||||||||||  ||||| | |||||||||||||||||||| ||||||||||||||| ||||||||||||||     | |||||   ||  |     |||  |  | ||||| ||     ||    | ||||  |   ||  | |  |  | || |   |    
CGATGACATCCAAATGGGCAAGCGAGAGGAGACTCGTGACATTGCTCGTGTTTTGTCTCGCTATAATGACATCATTATGGCTCGTGTTTTTGCTCATAAGgtatgctggtga-ccggtgaatgtgacttactttatttcatttggccattggactacagttactcatgtttatggttagtgaagaattatctctgcctcta---

upper sequence: Vv18s0001g12780.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: AT1G75330.1 (Arabidopsis thaliana), 5'ss of exon 2
AGATGATATCCAGATGGGTAAACGGGAGGAAACTCGTGATGTTGCTCGTGTGCTGTCTTGTTATAATGACATCATTATGGCACGTGTTTTTGCTCATCAGgtatgctggtgagttttttaatgtttggtag-----tactcagatttca-----attggtcttgcatatgtgtatttaaagaaggtagatatattccacttctgttgcag
  |||| || ||||||||||| ||||||||||||||||||||||||||||| || ||  | |||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| | || ||  ||       | |   | |  |     |||  | | || | |    || | |  ||| ||  |  ||||   |          
CAATGACATTCAGATGGGTAAGCGGGAGGAAACTCGTGATGTTGCTCGTGTTCTTTCACGCTATAATGACATCATTATGGCTCGTGTATTTGCTCATCAGgtatgctggtgagtttttgattgattaataagggaacattagaagtgtacaaacatttctatggcttgttctaatctcagaaagataactgcattctcat----------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351056870|gb|FQ443497.1|FQ443497
EST:     TGCTGTCTTGTTATAATGACATCATTATGGCACGTGTTTTTGCGCATCAG                         GACATTCTTGATCTGGCTAAATATGCAACTGTACCTGTCATCAATGGCCTG
genomic: TGCTGTCTTGTTATAATGACATCATTATGGCACGTGTTTTTGCTCATCAGgtatgctggt ... tctgttgcagGACATTCTTGATCTGGCTAAATATGCAACTGTACCTGTCATCAATGGCCTG
EST: gi|110713639|gb|EE089746.1|EE089746
EST:     TGCTGTCTTGTTATAATGACATCATTATGGCACGTGTCTTTGCTCATCAG                         GACATTCTTGATCTGGCTAAATATGCAACTGTACCTGTCATCAATGGCCTG
genomic: TGCTGTCTTGTTATAATGACATCATTATGGCACGTGTTTTTGCTCATCAGgtatgctggt ... tctgttgcagGACATTCTTGATCTGGCTAAATATGCAACTGTACCTGTCATCAATGGCCTG
EST: gi|110718848|gb|EE096153.1|EE096153
EST:     TGCTGTCTTGTTATAATGACATCATTATGGCACGTGTTTTTGCTCATCAG                         GACATTCTTGATCTGGCTAAATATGCAACTGTACCTGTCATCAATGGCCTG
genomic: TGCTGTCTTGTTATAATGACATCATTATGGCACGTGTTTTTGCTCATCAGgtatgctggt ... tctgttgcagGACATTCTTGATCTGGCTAAATATGCAACTGTACCTGTCATCAATGGCCTG
EST: gi|351041613|gb|FQ455829.1|FQ455829
EST:     TGCTGTCTTGTTATAATGACATCATTATGGCACGTGTTTTTGCTCATCAG                         GACATTCTTGATCTGGCTAAATATGCAACTGTACCTGTCATCAATGGCCTG
genomic: TGCTGTCTTGTTATAATGACATCATTATGGCACGTGTTTTTGCTCATCAGgtatgctggt ... tctgttgcagGACATTCTTGATCTGGCTAAATATGCAACTGTACCTGTCATCAATGGCCTG
EST: gi|110723485|gb|EE100851.1|EE100851
EST:     TGCTGTCTTGTTATAATGACATCATTATGGCACGTGTTTTTGCTCATCAG                         GACATTCTTGATCTGGCTAAATATGCAACTGTACCTGTCATCAATGGCCTG
genomic: TGCTGTCTTGTTATAATGACATCATTATGGCACGTGTTTTTGCTCATCAGgtatgctggt ... tctgttgcagGACATTCTTGATCTGGCTAAATATGCAACTGTACCTGTCATCAATGGCCTG
EST: gi|349824294|gb|FQ417705.1|FQ417705
EST:     TGCTGTCTTGTTATAATGACATCATTATGGCACGTGTTTTTGCTCATCAG                         GACATTCTTGATCTGGCTAAATATGCAACTGTACCTGTCATCAATGGCCTG
genomic: TGCTGTCTTGTTATAATGACATCATTATGGCACGTGTTTTTGCTCATCAGgtatgctggt ... tctgttgcagGACATTCTTGATCTGGCTAAATATGCAACTGTACCTGTCATCAATGGCCTG
EST: gi|351030940|gb|FQ438976.1|FQ438976
EST:     TGCTGTCTTGTTATAATGACATCATTATGGCACGTGTTTTTGCTCATCAN                         GACATTCTTGATCTGGCTAAATATGCAACTGTACCTGTCATCAATGGCCTG
genomic: TGCTGTCTTGTTATAATGACATCATTATGGCACGTGTTTTTGCTCATCAGgtatgctggt ... tctgttgcagGACATTCTTGATCTGGCTAAATATGCAACTGTACCTGTCATCAATGGCCTG
EST: gi|351036443|gb|FQ457156.1|FQ457156
EST:     TGCTGTCTTGTTATAATGACATCATTATGGCACGTGTTTTTGCTCATCAG                         GACATTCTTGATCTGGCTAAATATGCAACTGTACCTGTCATCAATGGCCTG
genomic: TGCTGTCTTGTTATAATGACATCATTATGGCACGTGTTTTTGCTCATCAGgtatgctggt ... tctgttgcagGACATTCTTGATCTGGCTAAATATGCAACTGTACCTGTCATCAATGGCCTG
EST: gi|351034924|gb|FQ458281.1|FQ458281
EST:     TGCTGTCTTGTTATAATGACATCATTATGGCACGTGTTTTTGCTCATCAG                         GACATTCTTGATCTGGCTAAATATGCAACTGTACCTGTCATCAATGACCTG
genomic: TGCTGTCTTGTTATAATGACATCATTATGGCACGTGTTTTTGCTCATCAGgtatgctggt ... tctgttgcagGACATTCTTGATCTGGCTAAATATGCAACTGTACCTGTCATCAATGGCCTG
EST: gi|351035513|gb|FQ463358.1|FQ463358
EST:     TGCTGTCTTGTTATAATGACATCATTATGGCACGTGTTTTTGCTCATCAG                         GACATTCTTGATCTGGCTAAATATGCAACTGTACCTGTCATCAATGGCCTG
genomic: TGCTGTCTTGTTATAATGACATCATTATGGCACGTGTTTTTGCTCATCAGgtatgctggt ... tctgttgcagGACATTCTTGATCTGGCTAAATATGCAACTGTACCTGTCATCAATGGCCTG
EST: gi|351048346|gb|FQ449438.1|FQ449438
EST:     TGCTGTCTTGTTATAATGACATCATTATGGCACGTGTTTTTGCTCATCAN                         GACATTCTTGATCTGGCTAAATATGCAACTGTACCTGTCATCAATGGCCTG
genomic: TGCTGTCTTGTTATAATGACATCATTATGGCACGTGTTTTTGCTCATCAGgtatgctggt ... tctgttgcagGACATTCTTGATCTGGCTAAATATGCAACTGTACCTGTCATCAATGGCCTG
EST: gi|351034882|gb|FQ458239.1|FQ458239
EST:     TGCTGTCTTGTTATAATGACATCATTATGGCACGTGTTTTTGCTCATCAG                         GACATTCTTGATCTGGCTAAATATGCAACTGTACCTGTCATCAATGGCCTG
genomic: TGCTGTCTTGTTATAATGACATCATTATGGCACGTGTTTTTGCTCATCAGgtatgctggt ... tctgttgcagGACATTCTTGATCTGGCTAAATATGCAACTGTACCTGTCATCAATGGCCTG
EST: gi|351035222|gb|FQ458579.1|FQ458579
EST:     TGCTGTCTTGTTATAATGACATCATTATGGCACGTGTTTTTGCTCATCAG                         GACATTCTTGATCTGGCTAAATATGCAACTGTACCTGTCATCAATGGCCTG
genomic: TGCTGTCTTGTTATAATGACATCATTATGGCACGTGTTTTTGCTCATCAGgtatgctggt ... tctgttgcagGACATTCTTGATCTGGCTAAATATGCAACTGTACCTGTCATCAATGGCCTG
EST: gi|351032125|gb|FQ460382.1|FQ460382
EST:     TGCTGTCTTGTTATAATGACATCATTATGGCACGTGTTTTTGCTCATCAG                         GACATTCTTGATCTGGCTAAATATGCAACTGTACCTGTCATCAATGGCCTG
genomic: TGCTGTCTTGTTATAATGACATCATTATGGCACGTGTTTTTGCTCATCAGgtatgctggt ... tctgttgcagGACATTCTTGATCTGGCTAAATATGCAACTGTACCTGTCATCAATGGCCTG