Sequence
atgc intronic sequence ATGC exonic sequenceTCTGAGTACAATGGATAAAGTATATAACCTGGACTGGTTCAGTAGTGCTTCCAAGAATGAGTGCTTGGCTGCAGTTGGCTTCAAATGGATGCTTAATCAGgtgagtaacataacagaatttcagttcatgacttgaatttcatttgaaaaatgtagttaatcggttatgcgcttctattattaaatgggagatcatgttg...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv18s0001g11050.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: LOC_Os03g27760.1 (Oryza sativa), 5'ss of exon 3
TCTGAGTACAATGGATAAAGTATATAACCTGGACTGGTTCAGTAGTGCTTCCAAGAATGAGTGCTTGGCTGCAGTTGGCTTCAAATGGATGCTTAATCAGgtgagtaacataacagaatttcagttcatgacttgaatttcatttgaaaaatgtagttaatcg-----gttatgcgcttctattattaaatgggagatcatgttg
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AACAAAGACACTGGATAAGGTGTACAATTTGGATTGGAATAGTAGTGCTTCTAAGAATGAATGCACTGCTGCTGTTGGCTTAAAATGGATGCTTAATCAGgtgagaagaagagtgaaatctagattaacattttgtttttttttaattcaccctccttgcccttcctcgaagtttgttattttttttacttgataagcaa-----
upper sequence: Vv18s0001g11050.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GRMZM2G136538_T03 (Zea mays), 5'ss of exon 3
TCTGAGTACAATGGATAAAGTATATAACCTGGACTGGTTCAGTAGTGCTTCCAAGAATGAGTGCTTGGCTGCAGTTGGCTTCAAATGGATGCTTAATCAGgtgagtaacataaca-gaatttcagttcatg-acttgaatttcatttgaaaaatgtagttaatcggttat-----gcgcttctattattaaatgggagatcatgttg
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AGTAAATGCCATGGATAGAGTGTACAGCTTGGATTGGAACAGTAGTGCTTCCAAGAATGAGTGCACTGCTGCTATTGGCTTCAAGTGGATGCTTAATCAGgtgatgactaaaacatgcagtatagataatttaattggatatcattttgttcatttattttttcattcagtcccagtacattcacaactaggtgctagat-------
upper sequence: Vv18s0001g11050.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GRMZM2G003530_T01 (Zea mays), 5'ss of exon 3
TCTGAGTACAATGGATAAAGTATATAACCTGGACTGGTTCAGTAGTGCTTCCAAGAATGAGTGCTTGGCTGCAGTTGGCTTCAAATGGATGCTTAATCAGgtgagtaacataaca-gaatttcagttcatg-acttgaat---ttcatttgaaaaatgtagttaatcggtt---atgcgcttctattattaa-atgggagatcatgttg
| ||| |||||||||| || || |||||||| |||||| |||||||||||||||||| || || |||||||||| |||||||| ||||||||| | | | |||| | | | || | || | ||| || ||| | || | | | ||| | | ||| ||||||| ||| |
AATAGATACCCTGGATAAAGTGTACAATTTGGACTGGAACAGTAGCGCTTCCAAGAATGAGTGCACTGCAGCTATTGGCTTCAAGTGGATGCTAAATCAGgtgcggactaaaacatgcagtatagataatttatttggatgatcctttttcatttatttttccatttagttccagtatgtttcaattattagtatgtgta---------
upper sequence: Vv18s0001g11050.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA04G03960.1 (Glycine max), 5'ss of exon 3
TCTGAGTACAATGGATAAAGTATATAACCTGGACTGGTTCAGTAGTGCTTCCAAGAATGAGTGCTTGGCTGCAGTTGGCTTCAAATGGATGCTTAATCAGgtgagtaaca--taacagaatttcagttcatgacttgaatttcatttgaaaaatgtagt-taatcggttat-gcgcttctattattaa-atgggagatcatgttg
| | |||||||||| ||| ||||| || || ||||| |||||||||||||||||||||| || || ||||||||||| ||||||||||||||||| | || | || || || | | | | | ||||| ||| | | |||| | || | || || || | ||| |||| | |||
TTTAGAGACAATGGATAGAGTGTATAATCTTGATTGGTTTTCTAGTGCTTCCAAGAATGAGTGCACTGCAGCTGTTGGCTTCAAGTGGATGCTTAATCAGgtagacaccaatttactaaaggacaaaacttaaat-gtatttc-tttaggtactttagtgttatttttaattaaaattgtaattttaccatggtaacctatg---
upper sequence: Vv18s0001g11050.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA06G04120.1 (Glycine max), 5'ss of exon 3
--------------TCTGAGTACAATGGATAAAGT--ATATAACCTGGACTGGTTCAGTAGTGCTTCCAAGAATGAGTGCTTGGCTGCAGTTGGCTTCAAATGGATGCTTAATCAGgtgagtaacataacagaatttcagttcatgacttgaatttcatttgaaaaatgtagttaatcggttatgcgcttctattattaaatgggagatcatgttg
| || |||||||||||||| |||||| || || ||||| |||||||||||||||||||||| || || ||||||||||| | ||||||||||||||| | || | | || || | |||| ||| | || | ||| || || ||||| || || | ||||||| | | |
AACGTTTCTTCAATTTTGGAGACAATGGATAAAGTGTATATAATCTTGATTGGTTTTCTAGTGCTTCCAAGAATGAGTGCACTGCGGCTGTTGGCTTCAAgttgatgcttaatcaggtagacaccaatata---ttaaagaaaaaaacttaaatgtatttctttag--gtactttat--gttat----ttttaatcataaatggaatttta-----
upper sequence: Vv18s0001g11050.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA14G08870.1 (Glycine max), 5'ss of exon 3
TCTGAGTACAATGGATAAAGTATATAACCTGGACTGGTTCAGTAGTGCTTCCAAGAATGAGTGCTTGGCTGCAGTTGGCTTCAAATGGATGCTTAATCAGgtgagt--aacataacagaatttcagttcatgacttga-atttcatttgaaaaatgtagttaatcggttatgcgcttctattatta--aatgggagatcatgttg
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TTTGAAGACAATGGATGTAGTGTTCAATCTTGATTGGTTCAGTGGTGCTTCCAAGAATGAGTGTTCCGCAGCTGTGGGCTACAAGTGGATGCTTAATCAGgtaattggagggtgtccaagaatgagttgtttttttaatggcaaatattaattgtttgtgttgttagttttttttttttttttttgttaatgggaggatt-----
upper sequence: Vv18s0001g11050.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA17G36300.1 (Glycine max), 5'ss of exon 2
TCTGAGTACAATGGATAAAGTATATAACCTGGACTGGTTCAGTAGTGCTTCCAAGAATGAGTGCTTGGCTGCAGTTGGCTTCAAATGGATGCTTAATCAGgtgagtaaca--taacagaatttcagttcatgacttgaatttcatttgaaaaatgtagttaatcggttatgcgcttctattattaaatgggagatcatgttg
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TTTGATGACAATGGATGAAGTGTTCAATCTTGATTGGTTCAGTGGTGCTTCCAAGAACGAGTGTTCCGCAGCTGTGGGCTACAAGTGGATGCTTAATCAGgtaactgaagggtgtttcaatttcatgaaccatcatggggttttttttttttttttaatcca-cagatattagttgttagtattttttgcagtggaaggat-Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|294964137|gb|GW837940.1|GW837940EST: CCAAGAATGAGTGCTTGGCTGCAGTTGGCTTCAAATGGATGCTTAATTAG GGTTTGATGGAACATCATAAAGATATTGTAAAGTACTTCAAGAA
genomic: CCAAGAATGAGTGCTTGGCTGCAGTTGGCTTCAAATGGATGCTTAATCAGgtgagtaaca ... tcttttgcagGGTTTGATGGAACATCATAAAGATATAGTAAAGTACTTCAAGAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TCTGAGTACAATGGATAAAGTATATAACCTGGACTGGTTCAGTAGTGCTTCCAAGAATGAGTGCTTGGCTGCAGTTGGCTTCAAATGGATGCTTAATCAGgtgagtaacataacagaatttcagttcatgacttgaatttcatttgaaaaatgtagttaatcggttatgcgcttctattattaaatgggagatcatgttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aacagaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaaaaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaatggga