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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AACTTATGGTAACCTAGTCACCATTCTTAGTATTGATGGAGGTGGTATCAGGGGCATCATTCCTGCAACTATCCTTGCTTGCCTGGAATCTCAACTTCAGgtataaattatttaatattatatggatgatcagttgcacatatttcatctctatattctactgcatgtcaaagtagggttcttggagcgatttttcttta...

Basic information

species Vitis vinifera
transcript Vv18s0001g10920.t01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv18s0001g10920.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA04G03970.1 (Glycine max), 5'ss of exon 1
AACTTATGGTAACCTAGTCACCATTCTTAGTATTGATGGAGGTGGTATCAGGGGCATCATTCCTGCAACTATCCTTGCTTGCCTGGAATCTCAACTTCAGgtataaat-tatttaatattatatggatga---tcagttgcacatattt-catctctata--ttctactgcatgtcaaagtagggttcttggagcgatttttcttta
||| ||||| ||| ||||||| ||||| || || || |||||||||||||||||||| || || |||||||| ||||||| ||| ||| | ||||||||||||   || |   |    ||| ||  |||    |   ||   |||||   |||   || |  || |  ||| | | |||  || |   ||  | | | ||       
AACCTATGGAAACTTAGTCACTATTCTCAGCATCGACGGAGGTGGTATCAGGGGCATTATCCCCGCAACTATTCTTGCTTTCCTTGAAGCGCAACTTCAGgtaggtatatgcatctatttacatcaatgggctttgatttaccatataggcatacgtacagttttttttgcgtattaaaa-agaggcattaaaccaaatta------

upper sequence: Vv18s0001g10920.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA17G36240.1 (Glycine max), 5'ss of exon 1
AACTTATGGTAACCTAGTCACCATTCTTAGTATTGATGGAGGTGGTATCAGGGGCATCATTCCTGCAACTATCCTTGCTTGCCTGGAATCTCAACTTCAGgtataaattatttaatattatatggatgatcagttgcacatatttcatctcta-tattctactgcatgtcaaagtagggttcttggagcgatttttcttta-
||||||||| |||||||| ||||||||||| || ||||| |||||||| || |||||||| || || || ||  ||| || ||| |||||||| |||||||||| ||    |  | |    ||  || |  |  |     | || |   |||| |    || |     |  |  ||   ||     | | |        || 
AACTTATGGAAACCTAGTAACCATTCTTAGCATCGATGGGGGTGGTATTAGAGGCATCATCCCCGCTACCATTATTGATTTCCTTGAATCTCAGCTTCAGgtatgaacacct--acacctaattaattactaagtattgttgttcctcttctaattaattaatcatcatttagctattttttcattaacaaaaccatactaa

upper sequence: Vv18s0001g10920.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA06G04130.1 (Glycine max), 5'ss of exon 1
AACTTATGGTAACCTAGTCACCATTCTTAGTATTGATGGAGGTGGTATCAGGGGCATCATTCCTGCAACTATCCTTGCTTGCCTGGAATCTCAACTTCAGgtataaattatttaatattatatggatgatcagttgcacatatttcatctctatattctactgcatgtcaaagtagggttcttgga-gcgatttttcttta
||| ||||| ||  ||||||| ||||| || || || |||||||||||||||||||| || || |||||||| ||||||| ||| ||| | ||||||||||| || ||   |  || ||| || ||||      ||   || |    |||   |||  |   |    |  |  ||   |   |  | |||   ||| ||  
AACCTATGGAAATTTAGTCACTATTCTCAGCATCGACGGAGGTGGTATCAGGGGCATTATCCCCGCAACTATTCTTGCTTTCCTTGAAGCCCAACTTCAGgtctatatgcatctat-ttacattgatgtgtgtgtgtctatctaaattctaattatgtttaagggctttgagttaccatatatacatgcgcagttttttgg

upper sequence: Vv18s0001g10920.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA17G36250.1 (Glycine max), 5'ss of exon 1
AACTTATGGTAACCTAGTCACCATTCTTAGTATTGATGGAGGTGGTATCAGGGGCATCATTCCTGCAACTATCCTTGCTTGCCTGGAATCTCAACTTCAGgtataaattatttaatat---tatatggatgatcagttgcaca--tatttcatctctatattctactgcatgtcaaagtagggttcttggagcgatttttcttta
 |||||||| ||| | || ||||||||||| || ||||| ||||| || ||||||||||| || || || ||  ||| || ||| |||||||| |||||||||||  | || ||||     |||| |  | || |  |    |  ||    |    | |  |  |     |    ||  |    |  || ||| || | | ||| 
-ACTTATGGAAACTTGGTAACCATTCTTAGCATCGATGGGGGTGGCATTAGGGGCATCATCCCCGCTACCATTATTGATTTCCTTGAATCTCAGCTTCAGGtata--tcatctaatgctcctatacgcctaattaactagctagctacacaagtattgttattcatcttctaattaatcatcactgatg-agctatatatattt-

upper sequence: Vv18s0001g10920.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA14G08910.1 (Glycine max), 5'ss of exon 1
AACTTATGGTAACCTAGTCACCATTCTTAGTATTGATGGAGGTGGTATCAGGGGCATCATTCCTGCAACTATCCTTGCTTGCCTGGAATCTCAACTTCAGgtata--aattatttaatattatatggatgatcagttg-cacatatttcatctctatattctactgcatgtcaaagtagggttcttggagcgatttttcttta-------------------------------------------------------------------------------------------------
||||||||| |||||||| || |||||||| || ||||| ||||| ||  |||||||||| || || || ||  ||| || ||| ||||| || |||||||||||   || || ||    || |   ||  |   ||  |   || || |||  |   |  |     || |  |  |    | |||      |   |    ||                                                                                                 
AACTTATGGAAACCTAGTAACTATTCTTAGCATCGATGGGGGTGGGATTCGGGGCATCATCCCCGCTACCATTATTGGTTTCCTTGAATCCCAGCTTCAGgtatattgatcatctagctatacaaatattgttgtttatcttctaattaatccatcactgatgagctatatatatattttttccttaacaaaaccatgacataatagtatattactaataataattcataaccaaccaaaatgaaatgtttaattcataacgacatatatattcatcggggccatgatgatgcaatgcag