Sequence
atgc intronic sequence ATGC exonic sequenceAGTTGGAAGGGGAAAATACAGTGAGGTTTTTGAAGGTATAAATGTGACAAACAATGAAAGATGCGTAGTCAAGATTCTTAAACCTGTCAAAAAAAAGAAGgtattatacttgtcttctcttggtttaagagtagtttgtataggcctaagtgggatatatatttacatgtgtatatgttcactcattttgaccttatcta...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv18s0001g09320.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA05G22250.1 (Glycine max), 5'ss of exon 2
AGTTGGAAGGGGAAAATACAGTGAGGTTTTTGAAGGTATAAATGTGACAAACAATGAAAGATGCGTAGTCAAGATTCTTAAACCTGTCAAAAAAAAGAAGgtattatacttgtcttctcttggtttaagagtagtttgtataggcctaagtgggatatatatttacatgtgtatatgttcactcattttgaccttatcta-
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AGTGGGAAGGGGAAAGTACAGTGAGGTTTTTGAAGGCATAAATGTTAATAGCAATGAGCGTTGTATAATCAAGATTCTTAAGCCTGTCAAGAAAAAGAAGgtgacattttgtttttgcattgttgttcttttcgacctttgggacctggaggctgaataaagccaggcaggga-aggttctttagaactgttctcttaaaa
upper sequence: Vv18s0001g09320.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA17G17790.1 (Glycine max), 5'ss of exon 2
AGTTGGAAGGGGAAAATACAGTGAGGTTTTTGAAGGTATAAATGTGACAAACAATGAAAGATGCGTAGTCAAGATTCTTAAACCTGTCAAAAAAAAGAAGgtattatacttgtcttctc---ttggtttaagagtagtttgtataggcctaagtgggatatatatttacatgtgtatatgttcactcattttgaccttatcta
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AGTGGGAAGGGGAAAGTACAGTGAGGTTTTTGAAGGCATAAATGTTAATAGCAATGAGCGTTGTGTAATCAAGATTCTCAAGCCTGTCAAGAAAAAGAAGgtgagat-tttgtttttttacattgttgttgttttcgacctttgggatccggagagtgaataaagccagcca-gtgaagcttcatttgaactattctcctaa-
upper sequence: Vv18s0001g09320.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: PP1S63_208V6.1 (Physcomitrella patens), 5'ss of exon 3
AGTTGGAAGGGGAAAATACAGTGAGGTTTTTGAAGGTATAAATGTGACAAACAATGAAAGATGCGTAGTCAAGATTCTTAAACCTGTCAAAAAAAAGAAGgtattatactt--gtcttc-----tcttggtttaagagtagtttgtataggcctaagtgggatatatatttacatgtgtata-tgttcactcattttgaccttatcta
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AGTAGGGCGGGGGAAATACAGTGAGGTTTTTGAAGGTGTTCACGCCGTGAACAGTGAGCGTTGCGTTATTAAGATTTTGAAGCCAGTGAAGAAAAAAAAGgtaccaagcttcggtacccaacattcttcatctgat-gcattttgcat--ccttgatagagccagtcgtttatggttttccagcaatttcttgggcaagcttt-----Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|71860686|gb|DT009741.1|DT009741EST: ACAATGAAAGATGCGTAGTCAAGATTCTTAAACCTGTCNNNNNNNNGAAG ATAAAGAGGGAGATAAAAATACTTCAGAACCTTTGTGGAGGCCCAAATATT
genomic: ACAATGAAAGATGCGTAGTCAAGATTCTTAAACCTGTCAAAAAAAAGAAGgtattatact ... tgttttgcagATAAAGAGGGAGATAAAAATACTTCAGAACCTTTGTGGAGGCCCAAATATT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AGTTGGAAGGGGAAAATACAGTGAGGTTTTTGAAGGTATAAATGTGACAAACAATGAAAGATGCGTAGTCAAGATTCTTAAACCTGTCAAAAAAAAGAAGgtattatacttgtcttctcttggtttaagagtagtttgtataggcctaagtgggatatatatttacatgtgtatatgttcactcattttgaccttatcta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aagagta