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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCATCTCTCCCGAACGAAGTTGTCTGCGAAAAAGAGAAATCTCGTATTACTgtgagcgattcctttttatcttccttaatttctattataatgttctccgatgtaataatgataagaattttttgataaatgcattttctttctcacaagatctaggattctttagggtttcctttcattgtagagctggcagattttgaatttctgtttcattcgaattcatggtttaaaacttttgatttcag

Basic information

species Vitis vinifera
transcript Vv18s0001g07960.t01
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|352776821|gb|FQ472708.1|FQ472708
EST:     CATCTCTCCCGAACGAAGTTGTCTGCGAAAAAGAGAAATCTCGTATTACT                         TGGACAAAACAATTGAATGCTCCGCTTGAGGTTGTTGATCCGGAAATCGCT
genomic: CATCTCTCCCGAACGAAGTTGTCTGCGAAAAAGAGAAATCTCGTATTACTgtgagcgatt ... ttgatttcagTGGACAAAACAATTGAATGCTCCGCTTGAGGTTGTTGATCCGGAAATCGCT
EST: gi|352795184|gb|FQ477294.1|FQ477294
EST:     CATCTCTCCCGAACGAAGTTGTCTGCGAAAAAGAGAAATCTCGTATTACT                         TGGACAAAACAATTGAATGCTCCGCTTGAGGTTGTTGATCCGGAAATCGCT
genomic: CATCTCTCCCGAACGAAGTTGTCTGCGAAAAAGAGAAATCTCGTATTACTgtgagcgatt ... ttgatttcagTGGACAAAACAATTGAATGCTCCGCTTGAGGTTGTTGATCCGGAAATCGCT
EST: gi|71862434|gb|DT011489.1|DT011489
EST:     CATCTCTCCCGAACGAAGTTGTCTGCGAAAAAGAGAAATCTCGTATTACT                         TGGACAAAACAATTGAATGCTCCGCTTGAGGTTGTTGATCCGGAAATCGCT
genomic: CATCTCTCCCGAACGAAGTTGTCTGCGAAAAAGAGAAATCTCGTATTACTgtgagcgatt ... ttgatttcagTGGACAAAACAATTGAATGCTCCGCTTGAGGTTGTTGATCCGGAAATCGCT
EST: gi|352764989|gb|FQ473637.1|FQ473637
EST:     CATCTCTCCCGAACGAAGTTGTCTGCGAAAAAGAGAAATCTCGTATTACT                         TGGACAAAACAATTGAATGCTCCGCTTGAGGTTGTTGATCCGGAAATCGCT
genomic: CATCTCTCCCGAACGAAGTTGTCTGCGAAAAAGAGAAATCTCGTATTACTgtgagcgatt ... ttgatttcagTGGACAAAACAATTGAATGCTCCGCTTGAGGTTGTTGATCCGGAAATCGCT
EST: gi|71855735|gb|DT004790.1|DT004790
EST:     CATCTCTCCCGAACGAAGTTGTTTGCGAAAAAGAGAAATCTCGTATTACT                         TGGACAAAACAATTGAATGCTCCGCTTGAGGTTGTTGATCCGGAAATCGCT
genomic: CATCTCTCCCGAACGAAGTTGTCTGCGAAAAAGAGAAATCTCGTATTACTgtgagcgatt ... ttgatttcagTGGACAAAACAATTGAATGCTCCGCTTGAGGTTGTTGATCCGGAAATCGCT
EST: gi|71854985|gb|DT004040.1|DT004040
EST:     CATCTCTCCCGAACGAAGTTGTTTGCGAAAAAGAGAAATCTCGTATTACT                         TGGACAAAACAATTGAATGCTCCGCTTGAGGTTGTTGATCCGGAAATCGCT
genomic: CATCTCTCCCGAACGAAGTTGTCTGCGAAAAAGAGAAATCTCGTATTACTgtgagcgatt ... ttgatttcagTGGACAAAACAATTGAATGCTCCGCTTGAGGTTGTTGATCCGGAAATCGCT
EST: gi|71858517|gb|DT007572.1|DT007572
EST:     CATCTCTCCCGAACGAAGTTGTTTGCGAAAAAGAGAAATCTCGTATTACT                         TGGACAAAACAATTGAATGCTCCGCTTGAGGTTGTTGATCCGGAAATCGCT
genomic: CATCTCTCCCGAACGAAGTTGTCTGCGAAAAAGAGAAATCTCGTATTACTgtgagcgatt ... ttgatttcagTGGACAAAACAATTGAATGCTCCGCTTGAGGTTGTTGATCCGGAAATCGCT
EST: gi|71857493|gb|DT006548.1|DT006548
EST:     CATCTCTCCCGAACGAAGTTGTTTGCGAAAAAGAGAAATCTCGTATTACT                         TGGACAAAACAATTGAATGCTCCGCTTGAGGTTGTTGATCCGGAAATCGCT
genomic: CATCTCTCCCGAACGAAGTTGTCTGCGAAAAAGAGAAATCTCGTATTACTgtgagcgatt ... ttgatttcagTGGACAAAACAATTGAATGCTCCGCTTGAGGTTGTTGATCCGGAAATCGCT
EST: gi|71858780|gb|DT007835.1|DT007835
EST:     CATCTCTCCCGAACGAAGTTGTTTGCGAAAAAGAGAAATCTCGTATTACT                         TGGACAAAACAATTGAATGCTCCGCTTGAGGTTGTTGATCCGGAAATCGCT
genomic: CATCTCTCCCGAACGAAGTTGTCTGCGAAAAAGAGAAATCTCGTATTACTgtgagcgatt ... ttgatttcagTGGACAAAACAATTGAATGCTCCGCTTGAGGTTGTTGATCCGGAAATCGCT
EST: gi|71854655|gb|DT003710.1|DT003710
EST:     CATCTCTCCCGAACGAAGTTGTTTGCGAAAAAGAGAAATCTCGTATTACT                         TGGACAAAACAATTGAATGCTCCGCTTGAGGTTGTTGATCCGGAAATCGCT
genomic: CATCTCTCCCGAACGAAGTTGTCTGCGAAAAAGAGAAATCTCGTATTACTgtgagcgatt ... ttgatttcagTGGACAAAACAATTGAATGCTCCGCTTGAGGTTGTTGATCCGGAAATCGCT
EST: gi|161708846|gb|FC059632.1|FC059632
EST:     CATCTCTCCCGAACGAAGTTGTTTGCGAAAAAGAGAAATCTCGTATTACT                         TGGACAAAACAATTGAATGCTCCGCTTGAGGTTGTTGATCCGGAAATCGCT
genomic: CATCTCTCCCGAACGAAGTTGTCTGCGAAAAAGAGAAATCTCGTATTACTgtgagcgatt ... ttgatttcagTGGACAAAACAATTGAATGCTCCGCTTGAGGTTGTTGATCCGGAAATCGCT
EST: gi|352781776|gb|FQ469074.1|FQ469074
EST:     CATCTCTCCCGAACGAAGTTGTCTGCGAAAAAGAGAAATCTCGTATTACT                         TGGACAAAACAATTGAATGCTCCGCTTGAGGTTGTTGATCCGGAAATCGCT
genomic: CATCTCTCCCGAACGAAGTTGTCTGCGAAAAAGAGAAATCTCGTATTACTgtgagcgatt ... ttgatttcagTGGACAAAACAATTGAATGCTCCGCTTGAGGTTGTTGATCCGGAAATCGCT
EST: gi|110359383|gb|EC920779.1|EC920779
EST:     CATCTCTCCCGAACGAAGTTGTTTGCGAAAAAGAGAAATCTCGTATTACT                         TGGACAAAACAATTGAATGCTCCGCTTGAGGTTGTTGATCCGGAAATCGCT
genomic: CATCTCTCCCGAACGAAGTTGTCTGCGAAAAAGAGAAATCTCGTATTACTgtgagcgatt ... ttgatttcagTGGACAAAACAATTGAATGCTCCGCTTGAGGTTGTTGATCCGGAAATCGCT
EST: gi|71858467|gb|DT007522.1|DT007522
EST:     CATCTCTCCCGAACGAAGTTGTTTGCGAAAAAGAGAAATCTCGTATTACT                         TGGACAAAACAATTGAATGCTCCGCTTGAGGTTGTTGATCCGGAAATCGCT
genomic: CATCTCTCCCGAACGAAGTTGTCTGCGAAAAAGAGAAATCTCGTATTACTgtgagcgatt ... ttgatttcagTGGACAAAACAATTGAATGCTCCGCTTGAGGTTGTTGATCCGGAAATCGCT
EST: gi|294966030|gb|GW837397.1|GW837397
EST:     CATCTCTCCCGAACGAAGTTGTCTGCGAAAAAGAGAAATCTCGTATTACT                         TGGACAAAACAATTGAATGCTCCGCTTGAGGTTGTTGATCCGGAAATCGCT
genomic: CATCTCTCCCGAACGAAGTTGTCTGCGAAAAAGAGAAATCTCGTATTACTgtgagcgatt ... ttgatttcagTGGACAAAACAATTGAATGCTCCGCTTGAGGTTGTTGATCCGGAAATCGCT
EST: gi|71855977|gb|DT005032.1|DT005032
EST:     CATCTCTCCCGAACGAAGTTGTTTGCGAAAAAGAGAAATCTCGTATTACT                         TGGACAAAACAATTGAATGCTCCGCTTGAGGTTGTTGATCCGGAAATCGCT
genomic: CATCTCTCCCGAACGAAGTTGTCTGCGAAAAAGAGAAATCTCGTATTACTgtgagcgatt ... ttgatttcagTGGACAAAACAATTGAATGCTCCGCTTGAGGTTGTTGATCCGGAAATCGCT
EST: gi|71857388|gb|DT006443.1|DT006443
EST:     CATCTCTCCCGAACGAAGTTGTTTGCGAAAAAGAGAAATCTCGTATTACT                         TGGACAAAACAATTGAATGCTCCGCTTGAGGTTGTTGATCCGGAAATCGCT
genomic: CATCTCTCCCGAACGAAGTTGTCTGCGAAAAAGAGAAATCTCGTATTACTgtgagcgatt ... ttgatttcagTGGACAAAACAATTGAATGCTCCGCTTGAGGTTGTTGATCCGGAAATCGCT
EST: gi|352764283|gb|FQ471263.1|FQ471263
EST:     CATCTCTCCCGAACGAAGTTGTCTGCGAAAAAGAGAAATCTCGTATTACT                         TGGACAAAACAATTGAATGCTCCGCTTGAGGTTGTTGATCCGGAAATCGCT
genomic: CATCTCTCCCGAACGAAGTTGTCTGCGAAAAAGAGAAATCTCGTATTACTgtgagcgatt ... ttgatttcagTGGACAAAACAATTGAATGCTCCGCTTGAGGTTGTTGATCCGGAAATCGCT
EST: gi|352768688|gb|FQ467900.1|FQ467900
EST:     CATCTCTCCTGAACGAAGTTGTCTGCGAAAAAGATAAATCTCGTATTACT                         TGGACAAAACAATTGAATGCTCCGCTTGAGGTTGTTGATCCGGAAATCGCT
genomic: CATCTCTCCCGAACGAAGTTGTCTGCGAAAAAGAGAAATCTCGTATTACTgtgagcgatt ... ttgatttcagTGGACAAAACAATTGAATGCTCCGCTTGAGGTTGTTGATCCGGAAATCGCT
EST: gi|71858984|gb|DT008039.1|DT008039
EST:     CATCTCTCCCGAACGAAGTTGTTTGCGAAAAAGAGAAATCTCGTATTACT                         TGGACAAAACAATTGAATGCTCCGCTTGAGGTTGTTGATCCGGAAATCGCT
genomic: CATCTCTCCCGAACGAAGTTGTCTGCGAAAAAGAGAAATCTCGTATTACTgtgagcgatt ... ttgatttcagTGGACAAAACAATTGAATGCTCCGCTTGAGGTTGTTGATCCGGAAATCGCT
EST: gi|71859287|gb|DT008342.1|DT008342
EST:     CATCTCTCCCGAACGAAGTTGTTTGCGAAAAAGAGAAATCTCGTATTACT                         TGGACAAAACAATTGAATGCTCCGCTTGAGGTTGTTGATCCGGAAATCGCT
genomic: CATCTCTCCCGAACGAAGTTGTCTGCGAAAAAGAGAAATCTCGTATTACTgtgagcgatt ... ttgatttcagTGGACAAAACAATTGAATGCTCCGCTTGAGGTTGTTGATCCGGAAATCGCT
EST: gi|161713667|gb|FC062807.1|FC062807
EST:     CATCTCTCCCGAACGAAGTTGTCTGCGAAAAAGAGAAATCTCGTATTACT                         TGGACAAAACAATTGAATGCTCCGCTTGAGGTTGTTGATCCGGAAATCGCT
genomic: CATCTCTCCCGAACGAAGTTGTCTGCGAAAAAGAGAAATCTCGTATTACTgtgagcgatt ... ttgatttcagTGGACAAAACAATTGAATGCTCCGCTTGAGGTTGTTGATCCGGAAATCGCT
EST: gi|352765325|gb|FQ466022.1|FQ466022
EST:     CATCTCTCCCGAACGAAGTTGTCTGCGAAAAAGAGAAATCTCGTATTACT                         TGGACAAAACAATTGAATGCTCCGCTTGAGGTTGTTGATCCGGAAATCGCT
genomic: CATCTCTCCCGAACGAAGTTGTCTGCGAAAAAGAGAAATCTCGTATTACTgtgagcgatt ... ttgatttcagTGGACAAAACAATTGAATGCTCCGCTTGAGGTTGTTGATCCGGAAATCGCT
EST: gi|71856061|gb|DT005116.1|DT005116
EST:     CATCTCTCCCGAACGAAGTTGTTTGCGAAAAAGAGAAATCTCGTATTACT                         TGGACAAAACAATTGAATGCTCCGCTTGAGGTTGTTGATCCGGAAATCGCT
genomic: CATCTCTCCCGAACGAAGTTGTCTGCGAAAAAGAGAAATCTCGTATTACTgtgagcgatt ... ttgatttcagTGGACAAAACAATTGAATGCTCCGCTTGAGGTTGTTGATCCGGAAATCGCT
EST: gi|71857262|gb|DT006317.1|DT006317
EST:     CATCTCTCCCGAACGAAGTTGTCTGCGAAAAAGAGAAATCTCGTATTACT                         TGGACAAAACAATTGAATGCTCCGCTTGAGGTTGTTGATCCGGAAATCGCT
genomic: CATCTCTCCCGAACGAAGTTGTCTGCGAAAAAGAGAAATCTCGTATTACTgtgagcgatt ... ttgatttcagTGGACAAAACAATTGAATGCTCCGCTTGAGGTTGTTGATCCGGAAATCGCT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TCATCTCTCCCGAACGAAGTTGTCTGCGAAAAAGAGAAATCTCGTATTACTgtgagcgattcctttttatcttccttaatttctattataatgttctccgatgtaataatgataagaattttttgataaatgcattttctttctcacaagatctaggattctttagggtttcctttcattgtagagctggcagattttgaatttctgtttcattcgaattcatggtttaaaacttttgatttcag

- - - - - - - - - - - - - - -  AAGAGA