Skip to another splice site:
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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGAGCTGTCAAAGATCTGCAATGACATATTGTCCGTCATTGATAATCATCTCATCCCATCATCCTCAACAGGGGAATCAACTGTTTTCTACTATAAGATgtgaggaatatttgactcttcttttccttttgtttattagattttgattattgggatacttcaaatgatgagcaaacttgattatgagatgggacaataa...

Basic information

species Vitis vinifera
transcript Vv18s0001g05720.t01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv18s0001g05720.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: AT1G22300.3 (Arabidopsis thaliana), 5'ss of exon 2
ATGAGCTGTCAAAGATCTGCAATGACATATTGTCCGTCATTGATAATCATCTCATCCCATCATCCTCAACAGGGGAATCAACTGTTTTCTACTATAAGATgtgaggaatatttgactcttcttttccttttgtttattagattttgattattggga-tacttcaaatgatgagcaaacttgattatgagatgggacaataa
|||||||  | ||  | || |||||||| ||||| ||||||||||| |||||||| ||||| ||     | | ||| |||||||| || | ||| || |||||||    || |   |  |  | |     |   | | | ||||   | | |  || |      | |   |    |      |||   | |      ||  
ATGAGCTTGCTAAAGTTTGTAATGACATCTTGTCTGTCATTGATAAGCATCTCATTCCATCGTCTAACGCTGTGGAGTCAACTGTCTTTTTCTACAAAATgtgagtgtcatctttattatactctgaccattcatgtgatatttgtgtgactaagaatgagatcatttccgtttgactaaagttaaatgtttaagttatt-

upper sequence: Vv18s0001g05720.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: PP1S201_25V6.1 (Physcomitrella patens), 5'ss of exon 2
ATGAGCTGTCAAAGATCTGCAATGACATATTGTCCGTCATTGATAATCATCTCATCCCATCATCCTCAACAGGGGAATCAACTGTTTTCTACTATAAGATgtgaggaatatttgactcttcttttccttttgtttattagattttgattattgggatacttcaaatgatgagcaaacttgattatgagatgggacaataa
| |||||||| |||||||||||||||||| ||||  ||||||||   ||| | || || || |||   || || || || || || |||||||| || ||||  || || |||        | | | |  ||  | |       ||| | |   |   | |    |    |  |    || ||  | |||||     | |
AGGAGCTGTCGAAGATCTGCAATGACATACTGTCGATCATTGATGGGCATTTGATTCCTTCGTCCAGCACGGGAGAGTCCACCGTGTTCTACTACAAAATgtacggcatgttttgagagattgtgcatgatgaatctctttgagtgactgtgacgcgtccttgttttgctacaaggtgtgcttgggggatggagtgctga
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110709573|gb|EE085152.1|EE085152
EST:     TTCATCCCATCATCCTCAACAGGGGAATCAACTGTTTTTTACTATAGGAT                         GAAAGGAGATTACTACCGATATTTAGCTGAA-TCAAAAGCAGGGAATGACC
genomic: CTCATCCCATCATCCTCAACAGGGGAATCAACTGTTTTCTACTATAAGATgtgaggaata ... tttatgtcagGAAAGGAGATTACTACCGATATTTAGCTGAATTC-AAAGCAGGGAATGACC
EST: gi|351056616|gb|FQ442444.1|FQ442444
EST:     CTCATCCCATCATCCTCAACAGGGGAATCAACTGTTTTCTACTATAAGAT                         GAAAGGAGATTACTACCGATATTTAGCTGAATTCAAAGCAGGGAATGACCG
genomic: CTCATCCCATCATCCTCAACAGGGGAATCAACTGTTTTCTACTATAAGATgtgaggaata ... tttatgtcagGAAAGGAGATTACTACCGATATTTAGCTGAATTCAAAGCAGGGAATGACCG
EST: gi|349828294|gb|FQ416247.1|FQ416247
EST:     CTCATCCCATCATCCTCAACAGGGGAATCAACTGTTTTCTACTATCAGAT                         GAAAGGAGATTACTACCGATATTTAGCTGAATTCAAAGCAGGGAATGACCG
genomic: CTCATCCCATCATCCTCAACAGGGGAATCAACTGTTTTCTACTATAAGATgtgaggaata ... tttatgtcagGAAAGGAGATTACTACCGATATTTAGCTGAATTCAAAGCAGGGAATGACCG
EST: gi|110397825|gb|EC963748.1|EC963748
EST:     CTCATCCCATCATCCTCAACAGGGGAATCAACTGTTTTCTACTATAAGAT                         GAAAGGAGATTACTACCGATATTTAGCTGAATTCAAAGCAGGGAATGACCG
genomic: CTCATCCCATCATCCTCAACAGGGGAATCAACTGTTTTCTACTATAAGATgtgaggaata ... tttatgtcagGAAAGGAGATTACTACCGATATTTAGCTGAATTCAAAGCAGGGAATGACCG
EST: gi|30129889|gb|CB915228.1|CB915228
EST:     CTCATCCCATCATCCTCAACAGGGGAATCAACTGTTTTCTACTATAAGAT                         GAAAGGAGATTACTACCGATATTTAGCTGAATTCAAAGCAGGGAATGACCG
genomic: CTCATCCCATCATCCTCAACAGGGGAATCAACTGTTTTCTACTATAAGATgtgaggaata ... tttatgtcagGAAAGGAGATTACTACCGATATTTAGCTGAATTCAAAGCAGGGAATGACCG
EST: gi|351025290|gb|FQ434303.1|FQ434303
EST:     CTCATCCCATCATCCTCAACAGGGGAATCAACTGTTTTCTACTATAAGAT                         GAAAGGAGATTACTACCGATATTTAGCTGAATTCAAAGCAGGGAATGACCG
genomic: CTCATCCCATCATCCTCAACAGGGGAATCAACTGTTTTCTACTATAAGATgtgaggaata ... tttatgtcagGAAAGGAGATTACTACCGATATTTAGCTGAATTCAAAGCAGGGAATGACCG
EST: gi|37189890|gb|CF609239.1|CF609239
EST:     CTCATCCCATCATCCTCAACAGGGGAATCAACTGTTTTCTACTATAAGAT                         GAAAGGAGATTACTACCGATATTTAGCTGAATTCAAAGCAGGGAATGACCG
genomic: CTCATCCCATCATCCTCAACAGGGGAATCAACTGTTTTCTACTATAAGATgtgaggaata ... tttatgtcagGAAAGGAGATTACTACCGATATTTAGCTGAATTCAAAGCAGGGAATGACCG
EST: gi|71890616|gb|DT039671.1|DT039671
EST:     CTCATCCCATCATCCTCAACAGGGGAATCAACTGTTTTCTACTATAAGAT                         GAAAGGAGATTACTACCGATATTTAGCTGAATTCAAAGCAGGGAATGACCG
genomic: CTCATCCCATCATCCTCAACAGGGGAATCAACTGTTTTCTACTATAAGATgtgaggaata ... tttatgtcagGAAAGGAGATTACTACCGATATTTAGCTGAATTCAAAGCAGGGAATGACCG
EST: gi|110364443|gb|EC924186.1|EC924186
EST:     CTCATCCCATCATCCTCAACAGGGGAATCAACTGTTTTCTACTATAAGAT                         GAAAGGAGATTACTACCGATATTTAGCTGAATTCAAAGCAGGGAATGACCG
genomic: CTCATCCCATCATCCTCAACAGGGGAATCAACTGTTTTCTACTATAAGATgtgaggaata ... tttatgtcagGAAAGGAGATTACTACCGATATTTAGCTGAATTCAAAGCAGGGAATGACCG
EST: gi|30133232|gb|CB918571.1|CB918571
EST:     CTCATCCCATCATCCTCAACAGGGGAATCAACTGTTTTCTACTATAAGAT                         GAAAGGAGATTACTACCGATATTTAGCTGAATTCAAAGCAGGGAATGACCG
genomic: CTCATCCCATCATCCTCAACAGGGGAATCAACTGTTTTCTACTATAAGATgtgaggaata ... tttatgtcagGAAAGGAGATTACTACCGATATTTAGCTGAATTCAAAGCAGGGAATGACCG
EST: gi|351054545|gb|FQ452021.1|FQ452021
EST:     CTCATCCCATCATCCTCAACAGGGGAATCAACTGTTTTCTACTATAAGAT                         GAAAGGAGATTACTACCGATATTTAGCTGAATTCAAAGCAGGGAATGACCG
genomic: CTCATCCCATCATCCTCAACAGGGGAATCAACTGTTTTCTACTATAAGATgtgaggaata ... tttatgtcagGAAAGGAGATTACTACCGATATTTAGCTGAATTCAAAGCAGGGAATGACCG
EST: gi|71890882|gb|DT039937.1|DT039937
EST:     CTCATCCCATCATCCTCAACAGGGGAATCAACTGTTTTCTACTATAAGAT                         GAAAGGAGATTACTACCGATATTTAGCTGAATTCAAAGCAGGGAATGACCG
genomic: CTCATCCCATCATCCTCAACAGGGGAATCAACTGTTTTCTACTATAAGATgtgaggaata ... tttatgtcagGAAAGGAGATTACTACCGATATTTAGCTGAATTCAAAGCAGGGAATGACCG
EST: gi|71886552|gb|DT035607.1|DT035607
EST:     CTCATCCCATCATCCTCAACAGGGGAATCAACTGTTTTCTACTATAAGAT                         GAAAGGAGATTACTACCGATATTTAGCTGAATTCAAAGCAGGGAATGACCG
genomic: CTCATCCCATCATCCTCAACAGGGGAATCAACTGTTTTCTACTATAAGATgtgaggaata ... tttatgtcagGAAAGGAGATTACTACCGATATTTAGCTGAATTCAAAGCAGGGAATGACCG
EST: gi|34363089|gb|CF404674.1|CF404674
EST:     CTGTTTTCTNCTATAAGAT                         GAAAGGAGATTACTACCGATATTTAGCTGAATTCAAAGCAGGGAATGACCG
genomic: CTGTTTTCTACTATAAGATgtgaggaata ... tttatgtcagGAAAGGAGATTACTACCGATATTTAGCTGAATTCAAAGCAGGGAATGACCG
EST: gi|30254150|gb|CB971165.1|CB971165
EST:     CTCATCCCATCATCCTCAACAGGGGAATCAACTGTTTTCTACTATAAGAT                         GAAAGGAGATTACTACCGATATTTAGCTGAATTCAAAGCAGGGAATGACCG
genomic: CTCATCCCATCATCCTCAACAGGGGAATCAACTGTTTTCTACTATAAGATgtgaggaata ... tttatgtcagGAAAGGAGATTACTACCGATATTTAGCTGAATTCAAAGCAGGGAATGACCG
EST: gi|71882296|gb|DT031351.1|DT031351
EST:     CTCATCCCATCATCCTCAACAGGGGAATCAACTGTTTTCTACTATAAGAT                         GAAAGGAGATTACTACCGATATTTAGCTGAATTCAAAGCAGGGAATGACCG
genomic: CTCATCCCATCATCCTCAACAGGGGAATCAACTGTTTTCTACTATAAGATgtgaggaata ... tttatgtcagGAAAGGAGATTACTACCGATATTTAGCTGAATTCAAAGCAGGGAATGACCG
EST: gi|351012745|gb|FQ430308.1|FQ430308
EST:     CTCATCCCATCATCCTCAACAGGGGAATCAACTGTTTTCTACTATAAGAT                         GAAAGGAGATTACTACCGATATTTAGCTGAATTCAAAGCAGGGAATGACCG
genomic: CTCATCCCATCATCCTCAACAGGGGAATCAACTGTTTTCTACTATAAGATgtgaggaata ... tttatgtcagGAAAGGAGATTACTACCGATATTTAGCTGAATTCAAAGCAGGGAATGACCG
EST: gi|87586625|gb|DY474825.1|DY474825
EST:     CTCATCCCATCATCCTCAACAGGGGAATCAACTGTTTTCTACTATAAGAT                         GAAAGGAGATTACTACCGATATTTAGCTGAATTCAAAGCAGGGAATGACCG
genomic: CTCATCCCATCATCCTCAACAGGGGAATCAACTGTTTTCTACTATAAGATgtgaggaata ... tttatgtcagGAAAGGAGATTACTACCGATATTTAGCTGAATTCAAAGCAGGGAATGACCG
EST: gi|71858331|gb|DT007386.1|DT007386
EST:     CTCATCCCATCATCCTCAACAGGGGAATCAACTGTTTTCTACTATAAGAT                         GAAAGGGGATTACTACCGATATTTAGCTGAATTCAAAGCAGGGAATGACCG
genomic: CTCATCCCATCATCCTCAACAGGGGAATCAACTGTTTTCTACTATAAGATgtgaggaata ... tttatgtcagGAAAGGAGATTACTACCGATATTTAGCTGAATTCAAAGCAGGGAATGACCG
EST: gi|27755229|gb|CB035984.1|CB035984
EST:     CAACAGGGGAATCAACTGTTTTCTACTATAAGAT                         GAAAGGAGATTACTACCGATATTTAGCTGAATTCAAAGCAGGGAATGACCG
genomic: CAACAGGGGAATCAACTGTTTTCTACTATAAGATgtgaggaata ... tttatgtcagGAAAGGAGATTACTACCGATATTTAGCTGAATTCAAAGCAGGGAATGACCG
EST: gi|32245214|gb|CD711033.1|CD711033
EST:     CTCATCCCATCATCCTCAACAGGGGAATCAACTGTTTTCTACTATAAGAT                         GAAAGGAGATTACTACCGATATTTAGCTGAATTCAAAGCAGGGAATGACCG
genomic: CTCATCCCATCATCCTCAACAGGGGAATCAACTGTTTTCTACTATAAGATgtgaggaata ... tttatgtcagGAAAGGAGATTACTACCGATATTTAGCTGAATTCAAAGCAGGGAATGACCG
EST: gi|71857173|gb|DT006228.1|DT006228
EST:     CTCATCCCATCATCCTCAACAGGGGAATCAACTGTTTTCTACTATAAGAT                         GAAAGGAGATTACTACCGATATTTAGCTGAATTCAAAGCAGGGAATGACCG
genomic: CTCATCCCATCATCCTCAACAGGGGAATCAACTGTTTTCTACTATAAGATgtgaggaata ... tttatgtcagGAAAGGAGATTACTACCGATATTTAGCTGAATTCAAAGCAGGGAATGACCG
EST: gi|71890644|gb|DT039699.1|DT039699
EST:     CTCATCCCATCATCCTCAACAGGGGAATCAACTGTTTTCTACTATAAGAT                         GAAAGGAGATTACTACCGATATTTAGCTGAATTCAAAGCAGGGAATGACCG
genomic: CTCATCCCATCATCCTCAACAGGGGAATCAACTGTTTTCTACTATAAGATgtgaggaata ... tttatgtcagGAAAGGAGATTACTACCGATATTTAGCTGAATTCAAAGCAGGGAATGACCG
EST: gi|110395364|gb|EC961026.1|EC961026
EST:     CTCATCCCATCATCCTCAACAGGGGAATCAACTGTTTTCTACTATAAGAT                         GAAAGGAGATTACTACCGATATTTAGCTGAATTCAAAGCAGGGAATGACCG
genomic: CTCATCCCATCATCCTCAACAGGGGAATCAACTGTTTTCTACTATAAGATgtgaggaata ... tttatgtcagGAAAGGAGATTACTACCGATATTTAGCTGAATTCAAAGCAGGGAATGACCG
EST: gi|110701469|gb|EE079073.1|EE079073
EST:     CTCATCCCATCATCCTCAACAGGGGAATCAACTGTTTTCTACTATAAGAT                         GAAAGGAGATTACTACCGATATTTAGCTGAATTCAAAGCAGGGAATGACCG
genomic: CTCATCCCATCATCCTCAACAGGGGAATCAACTGTTTTCTACTATAAGATgtgaggaata ... tttatgtcagGAAAGGAGATTACTACCGATATTTAGCTGAATTCAAAGCAGGGAATGACCG
EST: gi|110422906|gb|EC989240.1|EC989240
EST:     CTCATCCCATCATCCTCAACAGGGGAATCAACTGTTTTCTACTATAAGAT                         GAAAGGAGATTACTACCGATATTTAGCTGAATTCAAAGCAGGGAATGACCG
genomic: CTCATCCCATCATCCTCAACAGGGGAATCAACTGTTTTCTACTATAAGATgtgaggaata ... tttatgtcagGAAAGGAGATTACTACCGATATTTAGCTGAATTCAAAGCAGGGAATGACCG
EST: gi|30134657|gb|CB919995.1|CB919995
EST:     CTCATCCCATCATCCTCAACAGGGGAATCAACTGTTTTCTACTATAAGAT                         GAAAGGAGATTACTACCGATATTTAGCTGAATTCAAAGCAGGGAATGACCG
genomic: CTCATCCCATCATCCTCAACAGGGGAATCAACTGTTTTCTACTATAAGATgtgaggaata ... tttatgtcagGAAAGGAGATTACTACCGATATTTAGCTGAATTCAAAGCAGGGAATGACCG
EST: gi|110417293|gb|EC983336.1|EC983336
EST:     CTCATCCCATCATCCTCAACAGGGGAATCAACTGTTTTCTACTATAAGAT                         GAAAGGAGATTACTACCGATATTTAGCTGAATTCAAAGCAGGGAATGACCG
genomic: CTCATCCCATCATCCTCAACAGGGGAATCAACTGTTTTCTACTATAAGATgtgaggaata ... tttatgtcagGAAAGGAGATTACTACCGATATTTAGCTGAATTCAAAGCAGGGAATGACCG
EST: gi|71865310|gb|DT014365.1|DT014365
EST:     CTCATCCCATCATCCTCAACAGGGGAATCAACTGTTTTCTACTATAAGAT                         GAAAGGAGATTACTACCGATATTTAGCTGAATTCAAAGCAGGGAATGACCG
genomic: CTCATCCCATCATCCTCAACAGGGGAATCAACTGTTTTCTACTATAAGATgtgaggaata ... tttatgtcagGAAAGGAGATTACTACCGATATTTAGCTGAATTCAAAGCAGGGAATGACCG
EST: gi|110419923|gb|EC986180.1|EC986180
EST:     CTCATCCCATCATCCTCAACAGGGGAATCAACTGTTTTCTACTATAAGAT                         GAAAGGAGATTACTACCGATATTTAGCTGAATTCAAAGCAGGGAATGACCG
genomic: CTCATCCCATCATCCTCAACAGGGGAATCAACTGTTTTCTACTATAAGATgtgaggaata ... tttatgtcagGAAAGGAGATTACTACCGATATTTAGCTGAATTCAAAGCAGGGAATGACCG
EST: gi|110700774|gb|EE077725.1|EE077725
EST:     CTCATCCCATCATCCTCAACAGGGGAATCAACTGTTTTCTACTATAAGAT                         GAAAGGAGATTACTACCGATATTTAGCTGAATTCAAAGCAGGGAATGACCG
genomic: CTCATCCCATCATCCTCAACAGGGGAATCAACTGTTTTCTACTATAAGATgtgaggaata ... tttatgtcagGAAAGGAGATTACTACCGATATTTAGCTGAATTCAAAGCAGGGAATGACCG
EST: gi|27580489|gb|CB003184.1|CB003184
EST:     CTCATCCCATCATCCTCAACAGGGGAATCAACTGTTTTCTACTATAAGAT                         GAAAGGAGATTACTACCGATATTTAGCTGAATTCAAAGCAGGGAATGACCG
genomic: CTCATCCCATCATCCTCAACAGGGGAATCAACTGTTTTCTACTATAAGATgtgaggaata ... tttatgtcagGAAAGGAGATTACTACCGATATTTAGCTGAATTCAAAGCAGGGAATGACCG
EST: gi|71887923|gb|DT036978.1|DT036978
EST:     CTCATCCCATCATCCTCAACAGGGGAATCAACTGTTTTCTACTATAAGAT                         GAAAGGAGATTACTACCGATATTTAGCTGAATTCAAAGCAGGGAATGACCG
genomic: CTCATCCCATCATCCTCAACAGGGGAATCAACTGTTTTCTACTATAAGATgtgaggaata ... tttatgtcagGAAAGGAGATTACTACCGATATTTAGCTGAATTCAAAGCAGGGAATGACCG
EST: gi|351040928|gb|FQ443704.1|FQ443704
EST:     CTCATCCCATCATCCTCAACAGGGGAATCAACTGTTTTCTACTATAAGAT                         GAAAGGAGATTACTACCGATATTTAGCTGAATTCAAAGCAGGGAATGACCG
genomic: CTCATCCCATCATCCTCAACAGGGGAATCAACTGTTTTCTACTATAAGATgtgaggaata ... tttatgtcagGAAAGGAGATTACTACCGATATTTAGCTGAATTCAAAGCAGGGAATGACCG
EST: gi|110370298|gb|EC929339.1|EC929339
EST:     CTCATCCCATCATCCTCAACAGGGGAATCAACTGTTTTCTACTATAAGAT                         GAAAGGAGATTACTACCGATATTTAGCTGAATTCAAAGCAGGGAATGACCG
genomic: CTCATCCCATCATCCTCAACAGGGGAATCAACTGTTTTCTACTATAAGATgtgaggaata ... tttatgtcagGAAAGGAGATTACTACCGATATTTAGCTGAATTCAAAGCAGGGAATGACCG
EST: gi|18459307|gb|BM437585.1|BM437585
EST:     CTCATCCCATCATCCTCAACAGGGGAATCAACTGTTTTCTACTATAAGAT                         GAAAGGAGATTACTACCGATATTTAGCTGAATTCAAAGCAGGGAATGACCG
genomic: CTCATCCCATCATCCTCAACAGGGGAATCAACTGTTTTCTACTATAAGATgtgaggaata ... tttatgtcagGAAAGGAGATTACTACCGATATTTAGCTGAATTCAAAGCAGGGAATGACCG
EST: gi|30300606|gb|CB977400.1|CB977400
EST:     CTCATCCCATCATCCTCAACAGGGGAATCAACTGTTTTCTACTATAAGAT                         GAAAGGAGATTACTACCGATATTTAGCTGAATTCAAAGCAGGGAATGACCG
genomic: CTCATCCCATCATCCTCAACAGGGGAATCAACTGTTTTCTACTATAAGATgtgaggaata ... tttatgtcagGAAAGGAGATTACTACCGATATTTAGCTGAATTCAAAGCAGGGAATGACCG
EST: gi|351026498|gb|FQ428510.1|FQ428510
EST:     CTCATCCCATCATCCTCAACAGGGGAATCAACTGTTTTCTACTATAAGAT                         GAAAGGAGATTACTACCGATATTTAGCTGAATTCAAAGCAGGGAATGACCG
genomic: CTCATCCCATCATCCTCAACAGGGGAATCAACTGTTTTCTACTATAAGATgtgaggaata ... tttatgtcagGAAAGGAGATTACTACCGATATTTAGCTGAATTCAAAGCAGGGAATGACCG
EST: gi|18458453|gb|BM436731.1|BM436731
EST:     CTCATCCCATCATCCTCAACAGGGGAATCAACTGTTTTCTACTATAAGAT                         GAAAGGAGATTACTACCGATATTTAGCTGAATTCAAAGCAGGGAATGACCG
genomic: CTCATCCCATCATCCTCAACAGGGGAATCAACTGTTTTCTACTATAAGATgtgaggaata ... tttatgtcagGAAAGGAGATTACTACCGATATTTAGCTGAATTCAAAGCAGGGAATGACCG
EST: gi|34549688|gb|CF517920.1|CF517920
EST:     CTCATCCCATCATCCTCAACAGGGGAATCAACTGTTTTCTACTATAAGAT                         GAAAGGAGATTACTACCGATATTTAGCTGAATTCAAAGCAGGGAATGACCG
genomic: CTCATCCCATCATCCTCAACAGGGGAATCAACTGTTTTCTACTATAAGATgtgaggaata ... tttatgtcagGAAAGGAGATTACTACCGATATTTAGCTGAATTCAAAGCAGGGAATGACCG
EST: gi|18458948|gb|BM437226.1|BM437226
EST:     CTCATCCCATCATCCTCAACAGGGGAATCAACTGTTTTCTACTATAAGAT                         GAAAGGAGATTACTACCGATATTTAGCTGAATTCAAAGCAGGGAATGACCG
genomic: CTCATCCCATCATCCTCAACAGGGGAATCAACTGTTTTCTACTATAAGATgtgaggaata ... tttatgtcagGAAAGGAGATTACTACCGATATTTAGCTGAATTCAAAGCAGGGAATGACCG
EST: gi|294966583|gb|GW837718.1|GW837718
EST:     CTCATCCCATCATCCTCAACGGGGGAATCAACTGTTTTCTACTATAAGAT                         GAAAGGAGATTACTACCGATATTTAGCTGAATTCAAAGCAGGGAATGACCG
genomic: CTCATCCCATCATCCTCAACAGGGGAATCAACTGTTTTCTACTATAAGATgtgaggaata ... tttatgtcagGAAAGGAGATTACTACCGATATTTAGCTGAATTCAAAGCAGGGAATGACCG
EST: gi|351038901|gb|FQ457576.1|FQ457576
EST:     CTCATCCCATCATCCTCAACAGGGGAATCAACTGTTTTCTACTATAGGAT                         GAAAGGAGATTACTACCGATATTTAGCTGAATTCAAAGCAGGGAATGACCG
genomic: CTCATCCCATCATCCTCAACAGGGGAATCAACTGTTTTCTACTATAAGATgtgaggaata ... tttatgtcagGAAAGGAGATTACTACCGATATTTAGCTGAATTCAAAGCAGGGAATGACCG
EST: gi|30300673|gb|CB977467.1|CB977467
EST:     CTCATCCCATCATCCTCAACAGGGGAATCAACTGTTTTCTACTATAAGAT                         GAAAGGAGATTACTACCGATATTTAGCTGAATTCAAAGCAGGGAATGACCG
genomic: CTCATCCCATCATCCTCAACAGGGGAATCAACTGTTTTCTACTATAAGATgtgaggaata ... tttatgtcagGAAAGGAGATTACTACCGATATTTAGCTGAATTCAAAGCAGGGAATGACCG
EST: gi|71883642|gb|DT032697.1|DT032697
EST:     CTCATCCCATCATCCTCAACAGGGGAATCAACTGTTTTCTACTATAAGAT                         GAAAGGAGATTACTACCGATATTTAGCTGAATTCAAAGCAGGGAATGACCG
genomic: CTCATCCCATCATCCTCAACAGGGGAATCAACTGTTTTCTACTATAAGATgtgaggaata ... tttatgtcagGAAAGGAGATTACTACCGATATTTAGCTGAATTCAAAGCAGGGAATGACCG
EST: gi|161720183|gb|FC065142.1|FC065142
EST:     CTCATCCCATCATCCTCAACAGGGGAATCAACTGTTTTCTACTATAAGAT                         GACAGGAGATTACTACCGATATTTAGCTGAATTCAAAGCATGGAATGACCG
genomic: CTCATCCCATCATCCTCAACAGGGGAATCAACTGTTTTCTACTATAAGATgtgaggaata ... tttatgtcagGAAAGGAGATTACTACCGATATTTAGCTGAATTCAAAGCAGGGAATGACCG
EST: gi|352798988|gb|FQ480837.1|FQ480837
EST:     CTCATCCCATCATCCTCAACAGGGGAATCAACTGTTTTCTACTATAAGAT                         GAAAGGAGATTACTACCGATATTTAGCTGAATTCAAAGCAGGGAATGACCG
genomic: CTCATCCCATCATCCTCAACAGGGGAATCAACTGTTTTCTACTATAAGATgtgaggaata ... tttatgtcagGAAAGGAGATTACTACCGATATTTAGCTGAATTCAAAGCAGGGAATGACCG
EST: gi|34544771|gb|CF513003.1|CF513003
EST:     CTCATCCCATCATCCTCAACAGGGGAATCAACTGTTTTCTACTATAAGAT                         GAAAGGAGATTACTACCGATATTTAGCTGAATTCAAAGCAGGGAATGACCG
genomic: CTCATCCCATCATCCTCAACAGGGGAATCAACTGTTTTCTACTATAAGATgtgaggaata ... tttatgtcagGAAAGGAGATTACTACCGATATTTAGCTGAATTCAAAGCAGGGAATGACCG
EST: gi|110708623|gb|EE086376.1|EE086376
EST:     CTCATCCCATCATCCTCAACAGGGGAATCAACTGTTTTCTACTATAAGAT                         GAAAGGAGATTACTACCGATATTTAGCTGAATTCAAAGCAGGGAATGACCG
genomic: CTCATCCCATCATCCTCAACAGGGGAATCAACTGTTTTCTACTATAAGATgtgaggaata ... tttatgtcagGAAAGGAGATTACTACCGATATTTAGCTGAATTCAAAGCAGGGAATGACCG
EST: gi|71890727|gb|DT039782.1|DT039782
EST:     CTCATCCCATCATCCTCAACAGGGGAATCAACTGTTTTCTACTATAAGAT                         GAAAGGAGATTACTACCGATATTTAGCTGAATTCAAAGCAGGGAATGACCG
genomic: CTCATCCCATCATCCTCAACAGGGGAATCAACTGTTTTCTACTATAAGATgtgaggaata ... tttatgtcagGAAAGGAGATTACTACCGATATTTAGCTGAATTCAAAGCAGGGAATGACCG
EST: gi|110716449|gb|EE091439.1|EE091439
EST:     CTCATCCCATCATCCTCAACAGGGGAATCAACTGTTTTCTACTATAAGAT                         GAAAGGAGATTACTACCGATATTTAGCTGAATTCAAAGCAGGGAATGACCG
genomic: CTCATCCCATCATCCTCAACAGGGGAATCAACTGTTTTCTACTATAAGATgtgaggaata ... tttatgtcagGAAAGGAGATTACTACCGATATTTAGCTGAATTCAAAGCAGGGAATGACCG
EST: gi|110368574|gb|EC932559.1|EC932559
EST:     CTCATCCCATCATCCTCAACAGGGGAATCAACTGTTTTCTACTATAAGAT                         GAAAGGAGATTACTACCGATATTTAGCTGAATTCAAAGCAGGGAATGACCG
genomic: CTCATCCCATCATCCTCAACAGGGGAATCAACTGTTTTCTACTATAAGATgtgaggaata ... tttatgtcagGAAAGGAGATTACTACCGATATTTAGCTGAATTCAAAGCAGGGAATGACCG
EST: gi|161721649|gb|FC069779.1|FC069779
EST:     CTCATCCCATCATCCTCAACAGGGGAATCAACTGTTTTCTACTATAAGAT                         GAAAGGAGATTACTACCGATATTTAGCTGAATTCAAAGCAGGGAATGACCG
genomic: CTCATCCCATCATCCTCAACAGGGGAATCAACTGTTTTCTACTATAAGATgtgaggaata ... tttatgtcagGAAAGGAGATTACTACCGATATTTAGCTGAATTCAAAGCAGGGAATGACCG
EST: gi|351036204|gb|FQ464049.1|FQ464049
EST:     CTCATCCCATCATCCTCAACAGGGGAATCAACTGTTTTCTACTATAAGAT                         GAAAGGAGATTACTACCGATATTTAGCTGAATTCAAAGCAGGGAATGACCG
genomic: CTCATCCCATCATCCTCAACAGGGGAATCAACTGTTTTCTACTATAAGATgtgaggaata ... tttatgtcagGAAAGGAGATTACTACCGATATTTAGCTGAATTCAAAGCAGGGAATGACCG
EST: gi|161712664|gb|FC062236.1|FC062236
EST:     CTCATCCCATCATCCTCAACAGGGGAATCAACTGTTTTCTACTATAAGAT                         GAAAGGAGATTACTACCGATATTTAGCTGAATTCAAAGCAGGGAATGACCG
genomic: CTCATCCCATCATCCTCAACAGGGGAATCAACTGTTTTCTACTATAAGATgtgaggaata ... tttatgtcagGAAAGGAGATTACTACCGATATTTAGCTGAATTCAAAGCAGGGAATGACCG
EST: gi|77579060|gb|DV218356.1|DV218356
EST:     CTCATCCCATCATCCTCAACAGGGGAATCAACTGTTTTCTACTATAAGAT                         GAAAGGAGATTACTACCGATATTTAGCTGAATTCAAAGCAGGGAATGACCG
genomic: CTCATCCCATCATCCTCAACAGGGGAATCAACTGTTTTCTACTATAAGATgtgaggaata ... tttatgtcagGAAAGGAGATTACTACCGATATTTAGCTGAATTCAAAGCAGGGAATGACCG
EST: gi|351022476|gb|FQ446998.1|FQ446998
EST:     CTCATCCCATCATCCTCAACAGGGGAATCAACTGTTTTCTACTATAAGAT                         GAAAGGAGATTACTACCGATATTTAGCTGAATTCAAAGCAGGGAATGACCG
genomic: CTCATCCCATCATCCTCAACAGGGGAATCAACTGTTTTCTACTATAAGATgtgaggaata ... tttatgtcagGAAAGGAGATTACTACCGATATTTAGCTGAATTCAAAGCAGGGAATGACCG
EST: gi|110708397|gb|EE085894.1|EE085894
EST:     CTCATCCCATCATCCTCAACAGGGGAATCAACTGTTTTCTACTATAAGAT                         GAAAGGAGATTACTACCGATATTTAGCTGAATTCAAAGCAGGGAATGACCG
genomic: CTCATCCCATCATCCTCAACAGGGGAATCAACTGTTTTCTACTATAAGATgtgaggaata ... tttatgtcagGAAAGGAGATTACTACCGATATTTAGCTGAATTCAAAGCAGGGAATGACCG
EST: gi|351033022|gb|FQ461911.1|FQ461911
EST:     CTCATCCCATCATCCTCAACAGGGGAATCAACTGTTTTCTACTATAAGAT                         GAAAGGAGATTACTACCGATATTTAGCTGAATTCAAAGCAGGGAATGACCG
genomic: CTCATCCCATCATCCTCAACAGGGGAATCAACTGTTTTCTACTATAAGATgtgaggaata ... tttatgtcagGAAAGGAGATTACTACCGATATTTAGCTGAATTCAAAGCAGGGAATGACCG
EST: gi|110715051|gb|EE092660.1|EE092660
EST:     CTCATCCCATCATCCTCAACAGGGGAATCAACTGTTTTCTACTATAAGAT                         GAAAGGAGATTACTACCGATATTTAGCTGAATTCAAAGCAGGGAATGACCG
genomic: CTCATCCCATCATCCTCAACAGGGGAATCAACTGTTTTCTACTATAAGATgtgaggaata ... tttatgtcagGAAAGGAGATTACTACCGATATTTAGCTGAATTCAAAGCAGGGAATGACCG
EST: gi|71884972|gb|DT034027.1|DT034027
EST:     CTCATCCCATCATCCTCAACAGGGGAATCAACTGTTTTCTACTATAAGAT                         GAAAGGAGATTACTACCGATATTTAGCTGAATTCAAAGCAGGGAATGACCG
genomic: CTCATCCCATCATCCTCAACAGGGGAATCAACTGTTTTCTACTATAAGATgtgaggaata ... tttatgtcagGAAAGGAGATTACTACCGATATTTAGCTGAATTCAAAGCAGGGAATGACCG
EST: gi|110398286|gb|EC964539.1|EC964539
EST:     CTCATCCCATCATCCTCAACAGGGGAATCAACTGTTTTCTACTATAAGAT                         GAAAGGAGATTACTACCGATATTTAGCTGAATTCAAAGCAGGGAATGACCG
genomic: CTCATCCCATCATCCTCAACAGGGGAATCAACTGTTTTCTACTATAAGATgtgaggaata ... tttatgtcagGAAAGGAGATTACTACCGATATTTAGCTGAATTCAAAGCAGGGAATGACCG
EST: gi|110699231|gb|EE076048.1|EE076048
EST:     CTCATCCCATCATCCTCAACAGGGGAATCAACTGTTTTCTACTATAAGAT                         GAAAGGAGATTACTACCGATATTTAGCTGAATTCAAAGCAGGGAATGACCG
genomic: CTCATCCCATCATCCTCAACAGGGGAATCAACTGTTTTCTACTATAAGATgtgaggaata ... tttatgtcagGAAAGGAGATTACTACCGATATTTAGCTGAATTCAAAGCAGGGAATGACCG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ATGAGCTGTCAAAGATCTGCAATGACATATTGTCCGTCATTGATAATCATCTCATCCCATCATCCTCAACAGGGGAATCAACTGTTTTCTACTATAAGATgtgaggaatatttgactcttcttttccttttgtttattagattttgattattgggatacttcaaatgatgagcaaacttgattatgagatgggacaataa

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gggatac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gagcaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gggacaa