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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCACCACCGCAGATGATCTGTTCCCGCTTTTCGACAAGTACGGGAAAGTCGTTGATGTATTCATCCCCAGAGATCGAAGgtttcatctctcaatctttctcttcatatatgtacttattaattattcctttcttcttcgtttgttcttaatgctttattttcgtgggtatcgtgtgaggaataatatgtgcgtattggacaatggtttag

Basic information

species Vitis vinifera
transcript Vv18s0001g05550.t01
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351026523|gb|FQ428535.1|FQ428535
EST:     TTCGACAAGTACGGGAAAGTCGTTGATGTATTCATCCCCAGAGATCGAAG                         GACCGGTGACTCGAGGGGATTTGCATTTGTTCGTTATAAGTATGCGGATGA
genomic: TTCGACAAGTACGGGAAAGTCGTTGATGTATTCATCCCCAGAGATCGAAGgtttcatctc ... aatggtttagGACCGGTGACTCGAGGGGATTTGCATTTGTTCGTTATAAGTATGCGGATGA
EST: gi|351015878|gb|FQ431833.1|FQ431833
EST:     TTCGACAAGTACGGGAAAGTCGTTGATGTATTCATCCCCAGAGATCGAAG                         GACCGGTGACTCGAGGGGATTTGCATTTGTTCGTTATAAGTATGCGGATGA
genomic: TTCGACAAGTACGGGAAAGTCGTTGATGTATTCATCCCCAGAGATCGAAGgtttcatctc ... aatggtttagGACCGGTGACTCGAGGGGATTTGCATTTGTTCGTTATAAGTATGCGGATGA
EST: gi|32265216|gb|CD716805.1|CD716805
EST:     TTCGACAAGTACGGGAAAGTCGTTGATGTATTCATCCCCAGAGATCGAAG                         GACCGGTGACTCGAGGGGATTTGCATTTGTTCGTTATAAGTATGCGGATGA
genomic: TTCGACAAGTACGGGAAAGTCGTTGATGTATTCATCCCCAGAGATCGAAGgtttcatctc ... aatggtttagGACCGGTGACTCGAGGGGATTTGCATTTGTTCGTTATAAGTATGCGGATGA
EST: gi|351056154|gb|FQ453616.1|FQ453616
EST:     TTCGACAAGTACGGGAAAGTCGTTGATGTATTCATCCCCAGAGATCGAAG                         GACCGGTGACTCGAGGGGATTTGCATTTGTTCGTTATAAGTATGCGGATGA
genomic: TTCGACAAGTACGGGAAAGTCGTTGATGTATTCATCCCCAGAGATCGAAGgtttcatctc ... aatggtttagGACCGGTGACTCGAGGGGATTTGCATTTGTTCGTTATAAGTATGCGGATGA
EST: gi|110409912|gb|EC975586.1|EC975586
EST:     TTCGACAAGTACGGGAAAGTCGTTGATGTATTCATCCCCAGAGATCGAAG                         GACCGGTGACTCGAGGGGATTTGCATTTGTTCGTTATAAGTATGCGGATGA
genomic: TTCGACAAGTACGGGAAAGTCGTTGATGTATTCATCCCCAGAGATCGAAGgtttcatctc ... aatggtttagGACCGGTGACTCGAGGGGATTTGCATTTGTTCGTTATAAGTATGCGGATGA
EST: gi|351027210|gb|FQ444459.1|FQ444459
EST:     TTCGACAAGTACGGGAAAGTCGTTGATGTATTCATCCCCAGAGATCGAAG                         GACCGGTGACTCGAGGGGATTTGCATTTGTTCGTTATAAGTATGCGGATGA
genomic: TTCGACAAGTACGGGAAAGTCGTTGATGTATTCATCCCCAGAGATCGAAGgtttcatctc ... aatggtttagGACCGGTGACTCGAGGGGATTTGCATTTGTTCGTTATAAGTATGCGGATGA
EST: gi|110413030|gb|EC978799.1|EC978799
EST:     TTCGACAAGTACGGGAAAGTCGTTGATGTATTCATCCCCAGAGATCGAAG                         GACCGGTGACTCGAGGGGATTTGCATTTGTTCGTTATAAGTATGCGGATGA
genomic: TTCGACAAGTACGGGAAAGTCGTTGATGTATTCATCCCCAGAGATCGAAGgtttcatctc ... aatggtttagGACCGGTGACTCGAGGGGATTTGCATTTGTTCGTTATAAGTATGCGGATGA
EST: gi|351013557|gb|FQ425588.1|FQ425588
EST:     TTCGACAAGTACGGGAAAGTCGTTGATGTATTCATCCCCAGAGATCGAAG                         GACCGGTGACTCGAGGGGATTTGCATTTGTTCGTTATAAGTATGCGGATGA
genomic: TTCGACAAGTACGGGAAAGTCGTTGATGTATTCATCCCCAGAGATCGAAGgtttcatctc ... aatggtttagGACCGGTGACTCGAGGGGATTTGCATTTGTTCGTTATAAGTATGCGGATGA
EST: gi|37186472|gb|CF605825.1|CF605825
EST:     TTCGACAAGTACGGGAAAGTCGTTGATGTATTCATCCCCAGAGATCGAAG                         GACCGGTGACTCGAGGGGATTTGCATTTGTTCGTTATAAGTATGCGGATGA
genomic: TTCGACAAGTACGGGAAAGTCGTTGATGTATTCATCCCCAGAGATCGAAGgtttcatctc ... aatggtttagGACCGGTGACTCGAGGGGATTTGCATTTGTTCGTTATAAGTATGCGGATGA
EST: gi|351026982|gb|FQ436635.1|FQ436635
EST:     TTCGACAAGTACGGGAAAGTCGTTGATGTATTCATCCCCAGAGATCGAAG                         GACCGGTGACTCGAGGGGATTTGCATTTGTTCGTTATAAGTATGCGGATGA
genomic: TTCGACAAGTACGGGAAAGTCGTTGATGTATTCATCCCCAGAGATCGAAGgtttcatctc ... aatggtttagGACCGGTGACTCGAGGGGATTTGCATTTGTTCGTTATAAGTATGCGGATGA
EST: gi|349825188|gb|FQ415735.1|FQ415735
EST:     TTCGACAAGTACGGGAAAGTCGTTGATGTATTCATCCCCAGAGATCGAAG                         GACCGGTGACTCGAGGGGATTTGCATTTGTTCGTTATAAGTATGCGGATGA
genomic: TTCGACAAGTACGGGAAAGTCGTTGATGTATTCATCCCCAGAGATCGAAGgtttcatctc ... aatggtttagGACCGGTGACTCGAGGGGATTTGCATTTGTTCGTTATAAGTATGCGGATGA
EST: gi|161720292|gb|FC070553.1|FC070553
EST:     TTCGACAAGTACGGGAAAGTCGTTGATGTATTCATCCCCAGAGATCGAAG                         GACCGGTGACTCGAGGGGATTTGCATTTGTTCGTTATAAGTATGCGGATGA
genomic: TTCGACAAGTACGGGAAAGTCGTTGATGTATTCATCCCCAGAGATCGAAGgtttcatctc ... aatggtttagGACCGGTGACTCGAGGGGATTTGCATTTGTTCGTTATAAGTATGCGGATGA
EST: gi|351015736|gb|FQ431691.1|FQ431691
EST:     TTCGACAAGTACGGGAAAGTCGTTGATGTATTCATCCCCAGAGATCGAAG                         GACCGGTGACTCGAGGGGATTTGCATTTGTTCGTTATAAGTATGCGGATGA
genomic: TTCGACAAGTACGGGAAAGTCGTTGATGTATTCATCCCCAGAGATCGAAGgtttcatctc ... aatggtttagGACCGGTGACTCGAGGGGATTTGCATTTGTTCGTTATAAGTATGCGGATGA
EST: gi|110733043|gb|EE108857.1|EE108857
EST:     TTCGACAAGTACGGGAAAGTCGTTGATGTATTCATCCCCAGAGATCGAAG                         GACCGGTGACTCGAGGGGATTTGCATTTGTTCGTTATAAGTATGCGGATGA
genomic: TTCGACAAGTACGGGAAAGTCGTTGATGTATTCATCCCCAGAGATCGAAGgtttcatctc ... aatggtttagGACCGGTGACTCGAGGGGATTTGCATTTGTTCGTTATAAGTATGCGGATGA
EST: gi|110381112|gb|EC946429.1|EC946429
EST:     CAAGTACGGGAAAGTCGTTGATGTATTCATCCCCAGAGATCGAAG                         GACCGGTGACTCGAGGGGATTTGCATTTGTTCGTTATAAGTATGCGGATGA
genomic: CAAGTACGGGAAAGTCGTTGATGTATTCATCCCCAGAGATCGAAGgtttcatctc ... aatggtttagGACCGGTGACTCGAGGGGATTTGCATTTGTTCGTTATAAGTATGCGGATGA
EST: gi|349817238|gb|FQ405242.1|FQ405242
EST:     TTCGACAAGTACGGGAAAGTCGTTGATGTATTCATCCCCAGAGATCGAAG                         GACCGGTGACTCGAGGGGATTTGCATTTGTTCGTTATAAGTATGCGGATGA
genomic: TTCGACAAGTACGGGAAAGTCGTTGATGTATTCATCCCCAGAGATCGAAGgtttcatctc ... aatggtttagGACCGGTGACTCGAGGGGATTTGCATTTGTTCGTTATAAGTATGCGGATGA
EST: gi|351039277|gb|FQ461144.1|FQ461144
EST:     TTCGACAAGTACGGGAAAGTCGTTGATGTATTCATCCCCAGAGATCGAAG                         GACCGGTGACTCGAGGGGATTTGCATTTGTTCGTTATAAGTATGCGGATGA
genomic: TTCGACAAGTACGGGAAAGTCGTTGATGTATTCATCCCCAGAGATCGAAGgtttcatctc ... aatggtttagGACCGGTGACTCGAGGGGATTTGCATTTGTTCGTTATAAGTATGCGGATGA
EST: gi|294964425|gb|GW838228.1|GW838228
EST:     TTCGACAAGTACGGGAAAGTCGTTGATGTATTCATCCCCAGAGATCGAAG                         GACCGGTGACTCGAGGGGATTTGCATTTGTTCGTTATAAGTATGCGGATGA
genomic: TTCGACAAGTACGGGAAAGTCGTTGATGTATTCATCCCCAGAGATCGAAGgtttcatctc ... aatggtttagGACCGGTGACTCGAGGGGATTTGCATTTGTTCGTTATAAGTATGCGGATGA
EST: gi|349809657|gb|FQ414548.1|FQ414548
EST:     TTCGACAAGTACGGGAAAGTCGTTGATGTATTCATCCCCAGAGATCGAAG                         GACCGGTGACTCGAGGGGATTTGCATTTGTTCGTTATAAGTATGCGGATGA
genomic: TTCGACAAGTACGGGAAAGTCGTTGATGTATTCATCCCCAGAGATCGAAGgtttcatctc ... aatggtttagGACCGGTGACTCGAGGGGATTTGCATTTGTTCGTTATAAGTATGCGGATGA
EST: gi|110430375|gb|EC996928.1|EC996928
EST:     TTCGACAAGTACGGGAAAGTCGTTGATGTATTCATCCCCAGAGATCGAAG                         GACCGGTGACTCGAGGGGATTTGCATTTGTTCGTTATAAGTATGCGGATGA
genomic: TTCGACAAGTACGGGAAAGTCGTTGATGTATTCATCCCCAGAGATCGAAGgtttcatctc ... aatggtttagGACCGGTGACTCGAGGGGATTTGCATTTGTTCGTTATAAGTATGCGGATGA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GCACCACCGCAGATGATCTGTTCCCGCTTTTCGACAAGTACGGGAAAGTCGTTGATGTATTCATCCCCAGAGATCGAAGgtttcatctctcaatctttctcttcatatatgtacttattaattattcctttcttcttcgtttgttcttaatgctttattttcgtgggtatcgtgtgaggaataatatgtgcgtattggacaatggtttag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGATC