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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGCCCTCGTCGTAATCGAAGGTCGCCTGTATTGAGGGCATCATTCCAGGAAACAAATTTATCTCCTGCAAATTTTGTCTATCCACTCTTTATTCATGAAGgttggtattaatgttttttgaggaaattccaaagaattaattttactctctctctctctctctctctctggcatgcgcgcatgcgcacacatacacgcacacatatatttctgtctcattttatgagacttgcag

Basic information

species Vitis vinifera
transcript Vv18s0001g02550.t01
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|352789677|gb|FQ476275.1|FQ476275
EST:     AACAAATTTATCTCCTGCAAATTTTGTCTATCCACTCTTTATTCATGAAG                         GTGAAGAGGACACCCCTATTGGAGCCATGCCTGGATGTTATAGGCTAGGAT
genomic: AACAAATTTATCTCCTGCAAATTTTGTCTATCCACTCTTTATTCATGAAGgttggtatta ... agacttgcagGTGAAGAGGACACCCCTATTGGAGCCATGCCTGGATGTTATAGGCTAGGAT
EST: gi|351023176|gb|FQ432559.1|FQ432559
EST:     AACAAATTTATCTCCTGCAAATTTTGTCTATCCACTCTTTATTCATGAAG                         GTGAAGAGGACACCCCTATTGGAGCCATGCCTGGATGTTATAGGCTAGGAT
genomic: AACAAATTTATCTCCTGCAAATTTTGTCTATCCACTCTTTATTCATGAAGgttggtatta ... agacttgcagGTGAAGAGGACACCCCTATTGGAGCCATGCCTGGATGTTATAGGCTAGGAT
EST: gi|351039238|gb|FQ457913.1|FQ457913
EST:     AACAAATTTATCTCCTGCAAATTTTGTCTATCCACTCTTTATTCATGAAG                         GTGAAGAGGACACCCCTATTGGAGCCATGCCTGGATGTTATAGGCTAGGAT
genomic: AACAAATTTATCTCCTGCAAATTTTGTCTATCCACTCTTTATTCATGAAGgttggtatta ... agacttgcagGTGAAGAGGACACCCCTATTGGAGCCATGCCTGGATGTTATAGGCTAGGAT
EST: gi|349830570|gb|FQ416868.1|FQ416868
EST:     AACAAATTTATCTCCTGCAAATTTTGTCTATCCACTCTTTATTCATGAAG                         GTGAAGAGGACACCCCTATTGGAGCCATGCCTGGATGTTATAGGCTAGGAT
genomic: AACAAATTTATCTCCTGCAAATTTTGTCTATCCACTCTTTATTCATGAAGgttggtatta ... agacttgcagGTGAAGAGGACACCCCTATTGGAGCCATGCCTGGATGTTATAGGCTAGGAT
EST: gi|351044281|gb|FQ447635.1|FQ447635
EST:     AACAAATTTATCTCCTGCAAATTTTGTCTATCCACTCTTTATTCATGAAG                         GTGAAGAGGACACCCCTATTGGAGCCATGCCTGGATGTTATAGGCTAGGAT
genomic: AACAAATTTATCTCCTGCAAATTTTGTCTATCCACTCTTTATTCATGAAGgttggtatta ... agacttgcagGTGAAGAGGACACCCCTATTGGAGCCATGCCTGGATGTTATAGGCTAGGAT
EST: gi|351036615|gb|FQ457328.1|FQ457328
EST:     AACAAATTTATCTCCTGCAAATTTTGTCTATCCACTCTTTATTCATGAAG                         GTGAAGAGGACACCCCTATTGGAGCCATGCCTGGATGTTATAGGCTAGGAT
genomic: AACAAATTTATCTCCTGCAAATTTTGTCTATCCACTCTTTATTCATGAAGgttggtatta ... agacttgcagGTGAAGAGGACACCCCTATTGGAGCCATGCCTGGATGTTATAGGCTAGGAT
EST: gi|349828957|gb|FQ419290.1|FQ419290
EST:     AACAAATTTATCTCCTGCAAATTTTGTCTATCCACTCTTTATTCATGAAG                         GTGAAGAGGACACCCCTATTGGAGCCATGCCTGGATGTTATAGGCTAGGAT
genomic: AACAAATTTATCTCCTGCAAATTTTGTCTATCCACTCTTTATTCATGAAGgttggtatta ... agacttgcagGTGAAGAGGACACCCCTATTGGAGCCATGCCTGGATGTTATAGGCTAGGAT
EST: gi|351052784|gb|FQ456511.1|FQ456511
EST:     AACAAATTTATCTCCTGCAAATTTTGTCTATCCACTCTTTATTCATGAAG                         GTGAAGAGGACACCCCTATTGGAGCCATGCCTGGATGTTATAGGCTAGGAT
genomic: AACAAATTTATCTCCTGCAAATTTTGTCTATCCACTCTTTATTCATGAAGgttggtatta ... agacttgcagGTGAAGAGGACACCCCTATTGGAGCCATGCCTGGATGTTATAGGCTAGGAT
EST: gi|110386828|gb|EC951456.1|EC951456
EST:     AACAAATTTATCTCCTGCAAATTTTGTCTATCCACTCTTTATTCATGAAG                         GTGAAGAGGACACCCCTATTGGAGCCATGCCTGGATGTTATAGGCTAGGAT
genomic: AACAAATTTATCTCCTGCAAATTTTGTCTATCCACTCTTTATTCATGAAGgttggtatta ... agacttgcagGTGAAGAGGACACCCCTATTGGAGCCATGCCTGGATGTTATAGGCTAGGAT
EST: gi|351044566|gb|FQ443097.1|FQ443097
EST:     AACAAATTTATCTCCTGCAAATTTTGTCTATCCACTCTTTATTCATGAAG                         GTGAAGAGGACACCCCTATTGGAGCCATGCCTGGATGTTATAGGCTAGGAT
genomic: AACAAATTTATCTCCTGCAAATTTTGTCTATCCACTCTTTATTCATGAAGgttggtatta ... agacttgcagGTGAAGAGGACACCCCTATTGGAGCCATGCCTGGATGTTATAGGCTAGGAT
EST: gi|110373793|gb|EC938150.1|EC938150
EST:     AACAAATTTATCTCCTGCAAATTTTGTCTATCCACTCTTTATTCATGAAG                         GTGAAGAGGACACCCCTATTGGAGCCATGCCTGGATGTTATAGGCTAGGAT
genomic: AACAAATTTATCTCCTGCAAATTTTGTCTATCCACTCTTTATTCATGAAGgttggtatta ... agacttgcagGTGAAGAGGACACCCCTATTGGAGCCATGCCTGGATGTTATAGGCTAGGAT
EST: gi|110732090|gb|EE107070.1|EE107070
EST:     AACAAATTTATCTCCTGCAAATTTTGTCTATCCACTTTTTATTCATGAAG                         GTGAAGAGGACACCCCTATTGGAGCCATGCCTGGATGTTATAGGCTAGGAT
genomic: AACAAATTTATCTCCTGCAAATTTTGTCTATCCACTCTTTATTCATGAAGgttggtatta ... agacttgcagGTGAAGAGGACACCCCTATTGGAGCCATGCCTGGATGTTATAGGCTAGGAT
EST: gi|351055179|gb|FQ440518.1|FQ440518
EST:     AACAAATTTATCTCCTGCAAATTTTGTCTATCCACTCTTTATTCATGAAG                         GTGAAGAGGACACCCCTATTGGAGCCATGCCTGGATGTTATAGGCTAGGAT
genomic: AACAAATTTATCTCCTGCAAATTTTGTCTATCCACTCTTTATTCATGAAGgttggtatta ... agacttgcagGTGAAGAGGACACCCCTATTGGAGCCATGCCTGGATGTTATAGGCTAGGAT
EST: gi|351012975|gb|FQ433702.1|FQ433702
EST:     AACAAATTTATCTCCTGCAAATTTTGTCTATCCACTCTTTATTCATGAAG                         GTGAAGAGGACACCCCTATTGGAGCCATGCCTGGATGTTATAGGCTAGGAT
genomic: AACAAATTTATCTCCTGCAAATTTTGTCTATCCACTCTTTATTCATGAAGgttggtatta ... agacttgcagGTGAAGAGGACACCCCTATTGGAGCCATGCCTGGATGTTATAGGCTAGGAT
EST: gi|351020103|gb|FQ445710.1|FQ445710
EST:     AACAAATTTATCTCCTGCAAATTTTGTCTATCCACTCTTTATTCATGAAG                         GTGAAGAGGACACCCCTATTGGAGCCATGCCTGGATGTTATAGGCTAGGAT
genomic: AACAAATTTATCTCCTGCAAATTTTGTCTATCCACTCTTTATTCATGAAGgttggtatta ... agacttgcagGTGAAGAGGACACCCCTATTGGAGCCATGCCTGGATGTTATAGGCTAGGAT
EST: gi|161718611|gb|FC068206.1|FC068206
EST:     AACAAATTTATCTCCTGCAAATTTTGTCTATCCACTCTTTATTCATGAAG                         GTGAAGAGGACACCCCTATTGGAGCCATGCCTGGATGTTATAGGCTAGGAT
genomic: AACAAATTTATCTCCTGCAAATTTTGTCTATCCACTCTTTATTCATGAAGgttggtatta ... agacttgcagGTGAAGAGGACACCCCTATTGGAGCCATGCCTGGATGTTATAGGCTAGGAT
EST: gi|351054528|gb|FQ452004.1|FQ452004
EST:     AACAAATTTATCTCCTGCAAATTTTGTCTATCCACTCTTTATTCATGAAG                         GTGAAGAGGACACCCCTATTGGAGCCATGCCTGGATGTTATAGGCTAGGAT
genomic: AACAAATTTATCTCCTGCAAATTTTGTCTATCCACTCTTTATTCATGAAGgttggtatta ... agacttgcagGTGAAGAGGACACCCCTATTGGAGCCATGCCTGGATGTTATAGGCTAGGAT
EST: gi|161714115|gb|FC064398.1|FC064398
EST:     AACAAATTTATCTCCTGCAAATTTTGTCTATCCACTCTTTATTCATGAAG                         GTGAAGAGGACACCCCTATTGGAGCCATGCCTGGATGTTATAGGCTAGGAT
genomic: AACAAATTTATCTCCTGCAAATTTTGTCTATCCACTCTTTATTCATGAAGgttggtatta ... agacttgcagGTGAAGAGGACACCCCTATTGGAGCCATGCCTGGATGTTATAGGCTAGGAT
EST: gi|349830492|gb|FQ416790.1|FQ416790
EST:     AACAAATTTATCTCCTGCAAATTTTGTCTATCCACTCTTTATTCATGAAG                         GTGAAGAGGACACCCCTATTAGAGCCATGCCTGGATGTTATAGGCTAGGAT
genomic: AACAAATTTATCTCCTGCAAATTTTGTCTATCCACTCTTTATTCATGAAGgttggtatta ... agacttgcagGTGAAGAGGACACCCCTATTGGAGCCATGCCTGGATGTTATAGGCTAGGAT
EST: gi|351015476|gb|FQ447305.1|FQ447305
EST:     AACAAATTTATCTCCTGCAAATTTTGTCTATCCACTCTTTATTCATGAAG                         GTGAAGAGGACACCCCTATTGGAGCCATGCCTGGATGTTATAGGCTAGGAT
genomic: AACAAATTTATCTCCTGCAAATTTTGTCTATCCACTCTTTATTCATGAAGgttggtatta ... agacttgcagGTGAAGAGGACACCCCTATTGGAGCCATGCCTGGATGTTATAGGCTAGGAT
EST: gi|349826066|gb|FQ415871.1|FQ415871
EST:     AACAAATTTATCTCCTGCAAATTTTGTCTATCCACTCTTTATTCATGAAG                         GTGAAGAGGACACCCCTATTGGAGCCATGCCTGGATGTTATAGGCTAGGAT
genomic: AACAAATTTATCTCCTGCAAATTTTGTCTATCCACTCTTTATTCATGAAGgttggtatta ... agacttgcagGTGAAGAGGACACCCCTATTGGAGCCATGCCTGGATGTTATAGGCTAGGAT